View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20469_high_36 (Length: 334)
Name: NF20469_high_36
Description: NF20469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20469_high_36 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 11 - 245
Target Start/End: Original strand, 42214839 - 42215073
Alignment:
| Q |
11 |
cacagatatcagttccctaaattttacaacagtgcatggtttgagattgatgtcatcttttagcaatatataagtctaccttctgttgttgactgccatg |
110 |
Q |
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| T |
42214839 |
cacacatatcagttccctaaattttacaacagtgcatggtttgagattgatatcatcttttagcaatatataagtctaacttctgttgttgactgccatg |
42214938 |
T |
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| Q |
111 |
ctagtttgtttttaagattgcatatttggtccaatagtatcttactattagttactgcgtttttaagcgattgaattaaatgagcagctgtaacttattt |
210 |
Q |
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| T |
42214939 |
ctagtttgtttttaagattgcatatttggtccaatagtatcttactattagttactgcgtttttaagcgattgaattaaatgagcagctgtaacttattt |
42215038 |
T |
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| Q |
211 |
agattttttaattaatttgacgtgtgacatatata |
245 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
42215039 |
agattttttaattaatttgacgtgtgacatatata |
42215073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 254 - 334
Target Start/End: Original strand, 42215104 - 42215181
Alignment:
| Q |
254 |
tcactaactgtaatgcacaataacagtcatgtaatgtaatttgagaaggaatcggtcagcaaagggatgatcatcagcttc |
334 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42215104 |
tcactaactgtaatgcacaa---cagtcatgtaatgtaatttgagaaggaatcggtcagcaaagggatgatcatcagcttc |
42215181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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