View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20469_high_37 (Length: 330)
Name: NF20469_high_37
Description: NF20469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20469_high_37 |
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Alignment Details
Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 75 - 256
Target Start/End: Complemental strand, 7832700 - 7832528
Alignment:
| Q |
75 |
tgtgacacctctagaaatctcaactatcgataactccaaacaatactactcataattttaattttaatttttataagagtaattaatgtatatagaaatt |
174 |
Q |
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| T |
7832700 |
tgtgacacctttagaaatctcaactattgataactcaaaa--atactactcataattttaatttt------tataagagtgactaatgtacatagaaatt |
7832609 |
T |
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| Q |
175 |
acgtcagtatatattacaaccttaatatgtaaaacttatcatacacaaagctgtacttattaatactagtgcatttttgtta |
256 |
Q |
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| T |
7832608 |
acgtcaatatatattacaaccttaatatataaaacttatcataca-aaagctacacttattaatactagtgcatttttgtta |
7832528 |
T |
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Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 255 - 321
Target Start/End: Complemental strand, 7831557 - 7831491
Alignment:
| Q |
255 |
tatattacattgttaacccagttatttaactagaccttctatgggttaggggtacggatagtctctg |
321 |
Q |
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| T |
7831557 |
tatattacatcattgacccatttatttaactagaccctctatgggttaggggtacggatagtctctg |
7831491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 255 - 321
Target Start/End: Original strand, 24234136 - 24234202
Alignment:
| Q |
255 |
tatattacattgttaacccagttatttaactagaccttctatgggttaggggtacggatagtctctg |
321 |
Q |
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| T |
24234136 |
tatattacatcgttgacccatttatttaactagaccttctatgggttaggggtacgaatagtctctg |
24234202 |
T |
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