View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20469_high_42 (Length: 291)
Name: NF20469_high_42
Description: NF20469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20469_high_42 |
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| [»] chr5 (5 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 17 - 291
Target Start/End: Original strand, 29567641 - 29567915
Alignment:
| Q |
17 |
caaatcctacataattgagttgttaaaattgttgcacataaactaggattacaagtgcaactatgatcaaattcaataccttcccataactcctagatcc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29567641 |
caaatcctacataattgagttgttaaaattgttgcacataaactaggattacaagtgcaactatgatcaaattcaataccttcccataactcctagatcc |
29567740 |
T |
|
| Q |
117 |
tacataatcaagcaagtgcaactaggatatacatatcaataaggaaaaacttataactttataagcataacttataagtagcaattaaagaaccaaattc |
216 |
Q |
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||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
29567741 |
tacataatcaagcaagtacaactaggagatacatatcaataaggaaaaacttataactttatgagcataacttgtaagtagcaattaaagaaccaaattc |
29567840 |
T |
|
| Q |
217 |
attgaagattacaatagaaaagacagtcacagtccaagattcaagacatatacctgagatatgactttttcatct |
291 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29567841 |
attgaagattacaatagaaaagacagtcacagtccaagattcaagacatatacctgagatatgactttttcatct |
29567915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 20 - 290
Target Start/End: Complemental strand, 29426130 - 29425860
Alignment:
| Q |
20 |
atcctacataattgagttgttaaaattgttgcacataaactaggattacaagtgcaactatgatcaaattcaataccttcccataactcctagatcctac |
119 |
Q |
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||||||||||||||| ||||||||||| ||||||| ||| || |||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||| |
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| T |
29426130 |
atcctacataattgaattgttaaaatttttgcacacaaattatgattacaaatgcaactatgatcaaattcaataccttcccataacccctggatcctac |
29426031 |
T |
|
| Q |
120 |
ataatcaagcaagtgcaactaggatatacatatcaataaggaaaaacttataactttataagcataacttataagtagcaattaaagaaccaaattcatt |
219 |
Q |
| |
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|||| ||| ||| ||||||||||||||||| |||||| |||||||||||| ||||| |||||||||| |||||| ||||||||||||||||| ||| |
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| T |
29426030 |
gtaattaagaaagcacaactaggatatacataaaaataagaaaaaacttataaatttatgagcataacttgtaagtaccaattaaagaaccaaatagatt |
29425931 |
T |
|
| Q |
220 |
gaagattacaatagaaaagacagtcacagtccaagattcaagacatatacctgagatatgactttttcatc |
290 |
Q |
| |
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|||||||||||||||||||||| |||||| || ||||||||||| |||||||||||||||||||||||| |
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| T |
29425930 |
gaagattacaatagaaaagacaatcacagctgaatattcaagacatgtacctgagatatgactttttcatc |
29425860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 20 - 291
Target Start/End: Complemental strand, 29169040 - 29168758
Alignment:
| Q |
20 |
atcctacataattgagttgttaaaattgttgcacataaactaggattacaagtgcaactatgatcaaattcaataccttcccataactcctagatcctac |
119 |
Q |
| |
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||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || || ||||| |
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| T |
29169040 |
atcctgcataattgagttgttaaaattgttacacataaactatgattacaagtgcaactatgatcaaattcaataccttcccataacccccggaccctac |
29168941 |
T |
|
| Q |
120 |
ataatcaagcaagtgcaactaggatatacatatcaata--aggaaaaacttataactttataagcataacttataag-------tagcaattaaagaacc |
210 |
Q |
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||||| | ||||||| ||||| ||||||||||| |||| | |||||||||||| ||||| |||||||||| |||| || ||||||||||||| |
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| T |
29168940 |
ataattatgcaagtgaaactaagatatacatataaatatgaaaaaaaacttataaatttatgagcataacttttaagtaacaactaacaattaaagaacc |
29168841 |
T |
|
| Q |
211 |
aaa--ttcattgaagattacaatagaaaagacagtcacagtccaagattcaagacatatacctgagatatgactttttcatct |
291 |
Q |
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||| | |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||| |
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| T |
29168840 |
aaaagtacattgaagattacaatagaaaagacaatcacagtcgaagattcaagacatatacctgagatatgacattttcatct |
29168758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 174 - 291
Target Start/End: Complemental strand, 27919319 - 27919202
Alignment:
| Q |
174 |
tttataagcataacttataagtagcaattaaagaaccaaattcattgaagattacaatagaaaagacagtcacagtccaagattcaagacatatacctga |
273 |
Q |
| |
|
||||| |||||||||| |||| | ||||| ||||||||||| ||||||||||||||||||||||| || |||||||| |||||||||||||| ||||||| |
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|
| T |
27919319 |
tttatgagcataacttgtaagaaccaattcaagaaccaaatacattgaagattacaatagaaaagtcaatcacagtcgaagattcaagacatgtacctga |
27919220 |
T |
|
| Q |
274 |
gatatgactttttcatct |
291 |
Q |
| |
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|||||||||||||||||| |
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| T |
27919219 |
gatatgactttttcatct |
27919202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 291
Target Start/End: Complemental strand, 1758748 - 1758691
Alignment:
| Q |
234 |
aaaagacagtcacagtccaagattcaagacatatacctgagatatgactttttcatct |
291 |
Q |
| |
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|||||||| ||||||| |||||||||||||| |||||||||||||||||||||||| |
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| T |
1758748 |
aaaagacaatcacagttgaagattcaagacatgcacctgagatatgactttttcatct |
1758691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 20 - 291
Target Start/End: Complemental strand, 25519307 - 25519034
Alignment:
| Q |
20 |
atcctacataattgagttgttaaaattgttgcacataaactaggattacaagtgcaactatga--tcaaattcaataccttcccataactcctagatcct |
117 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||||| |||||||| || |||||||| |||||||||||||||||||||||| || | ||||| |
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| T |
25519307 |
atcctgcataattgagctgttaaaattgttgcacataaactatgattacaattgaaactatgagatcaaattcaataccttcccataacccccaaatcct |
25519208 |
T |
|
| Q |
118 |
acataatcaagcaagtgcaactaggatatacatatcaataaggaaaaacttataactttataagcataacttataagtagcaattaaagaaccaaattca |
217 |
Q |
| |
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||||||| ||| ||||||||||||||||| ||||| |||||| ||||| | |||| ||||| |||||||||| |||||| ||||||||||||||||| || |
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| T |
25519207 |
acataattaagtaagtgcaactaggatattcatataaataagaaaaaattgataaatttatgagcataacttgtaagtaccaattaaagaaccaaataca |
25519108 |
T |
|
| Q |
218 |
ttgaagattacaatagaaaagacagtcacagtccaagattcaagacatatacctgagatatgactttttcatct |
291 |
Q |
| |
|
|| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25519107 |
ttcaagattacaatagaaaagacaatcacagtccaagattcaagacatatacctgagatatgactttttcatct |
25519034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 165; Significance: 3e-88; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 27 - 291
Target Start/End: Complemental strand, 18986894 - 18986630
Alignment:
| Q |
27 |
ataattgagttgttaaaattgttgcacataaactaggattacaagtgcaactatgatcaaattcaataccttcccataactcctagatcctacataatca |
126 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||| || ||| |||| |||| | |
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| T |
18986894 |
ataattgagttgttaaaattgctgcacataaactatgattagaaatgcaactatgatcaaattcaataccttcccataacccccggattctacgtaatta |
18986795 |
T |
|
| Q |
127 |
agcaagtgcaactaggatatacatatcaataaggaaaaacttataactttataagcataacttataagtagcaattaaagaaccaaattcattgaagatt |
226 |
Q |
| |
|
||||||||||||||||||||||||| || ||| |||||||||||| ||||| || ||||||| |||||| ||||||||||||||||| || |||||||| |
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| T |
18986794 |
agcaagtgcaactaggatatacataaaaacaagaaaaaacttataaatttatgagtataacttgtaagtaccaattaaagaaccaaatacactgaagatt |
18986695 |
T |
|
| Q |
227 |
acaatagaaaagacagtcacagtccaagattcaagacatatacctgagatatgactttttcatct |
291 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
18986694 |
acaatagaaaagacaatcacagttgaagattcaagacatgtacctgagatatgactttttcatct |
18986630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 20 - 291
Target Start/End: Complemental strand, 27462885 - 27462609
Alignment:
| Q |
20 |
atcctacataattgagttgttaaaattgttgcacataaactaggattacaagtgcaactatgatcaaattcaatacctt-----cccataactcctagat |
114 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||| || |||||||| || ||| |
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| T |
27462885 |
atcctatataattgagttgttaaaattgctgcacataaactataattacaaatgcaactatgatcaaattcaatactttaatttcccataacccccggat |
27462786 |
T |
|
| Q |
115 |
cctacataatcaagcaagtgcaactaggatatacatatcaataaggaaaaacttataactttataagcataacttataagtagcaattaaagaaccaaat |
214 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||| || ||| |||||||||||| ||||| |||||||||| |||||| ||||||||||||||||| |
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|
| T |
27462785 |
tctacgtaattaagcaagtgcaactaggatatacataaaaacaagaaaaaacttataaatttatgagcataacttgtaagtaccaattaaagaaccaaat |
27462686 |
T |
|
| Q |
215 |
tcattgaagattacaatagaaaagacagtcacagtccaagattcaagacatatacctgagatatgactttttcatct |
291 |
Q |
| |
|
|||||||||||||||||||||| || ||||||| || |||||||| || ||||||||||||||||||||||||| |
|
|
| T |
27462685 |
acattgaagattacaatagaaaactcaatcacagttgaatattcaagatatgtacctgagatatgactttttcatct |
27462609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 72 - 291
Target Start/End: Complemental strand, 27482902 - 27482683
Alignment:
| Q |
72 |
tgcaactatgatcaaattcaataccttcccataactcctagatcctacataatcaagcaagtgcaactaggatatacatatcaataaggaaaaacttata |
171 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || ||| |||| |||| || |||||| |||| |||||||||| || ||| ||||||||||| |
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|
| T |
27482902 |
tgcaactatgatcaaattcaataccttcccataacccccggattctacgtaattaaacaagtgtgactacgatatacataaaaacaagaaaaaacttata |
27482803 |
T |
|
| Q |
172 |
actttataagcataacttataagtagcaattaaagaaccaaattcattgaagattacaatagaaaagacagtcacagtccaagattcaagacatatacct |
271 |
Q |
| |
|
| ||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||| |||| || ||||||||||| || ||||| |
|
|
| T |
27482802 |
aatttatgagcataacttataagtaccaattaaagaaccaaatacattgaagattacaatagaaaacacaatcaccgttaaagattcaagatatgtacct |
27482703 |
T |
|
| Q |
272 |
gagatatgactttttcatct |
291 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
27482702 |
gagatatgactttttcatct |
27482683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 20 - 291
Target Start/End: Original strand, 27520637 - 27520886
Alignment:
| Q |
20 |
atcctacataattgagttgttaaaattgttgcacataaactaggattacaagtgcaactatgatcaaattcaataccttcccataactcctagatcctac |
119 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||| || ||| || | |
|
|
| T |
27520637 |
atcctatataattgagttgttaaaattgctgcacataaactatgattacaaatgcaactatgatcaaattcaataccttcccgtaacccccggattcttc |
27520736 |
T |
|
| Q |
120 |
ataatcaagcaagtgcaactaggatatacatatcaataaggaaaaacttataactttataagcataacttataagtagcaattaaagaaccaaattcatt |
219 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||| | ||||||| |||||| ||||||||||||||| | |||| |
|
|
| T |
27520737 |
gtaattaagcaagtgcaactaggatatacataaaaataagaa---------------------ataacttgtaagtaccaattaaagaaccaactacatt |
27520815 |
T |
|
| Q |
220 |
gaagattacaatagaaaagacagtcacagtccaagattcaagacatatacctgagatatgactttttcatct |
291 |
Q |
| |
|
||||||||| |||||||||||| ||||||| |||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
27520816 |
gaagattac-atagaaaagacaatcacagttgaagattcaagacatgtacctgcgatatgactttttcatct |
27520886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 27482939 - 27482903
Alignment:
| Q |
20 |
atcctacataattgagttgttaaaattgttgcacata |
56 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
27482939 |
atcctatataattgagttgttaaaattgctgcacata |
27482903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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