View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20469_high_43 (Length: 288)
Name: NF20469_high_43
Description: NF20469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20469_high_43 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 13 - 273
Target Start/End: Complemental strand, 16930382 - 16930122
Alignment:
| Q |
13 |
gaattggatcaatgtcttaatcataagaattaaaatcatgaacttctaatttnnnnnnncgtcgttagtttcaaatgatttttaagaattggtactccac |
112 |
Q |
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| T |
16930382 |
gaattggatcgatgtcttaatcataagaattaaaatcacgaacttctaatttaaaaaaccgtcgttagtttcaaatgatttttaagaattggtactccac |
16930283 |
T |
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| Q |
113 |
atgaactacttatcaagatggtaaaacccactaccgtaaatatttttgaatcaatcattttaaacatttattttttgctaaatcattacgtttataaatt |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
16930282 |
gtgaactacttatcaagatggtaaaacccactaccgtaaatatttttgaatcaatcattttaaacatttattttttgctaaatcattacgttaacaaatt |
16930183 |
T |
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| Q |
213 |
caaattctaaactaattatttacatgaaaaggggtggccgttggatgtggatggcaaacat |
273 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16930182 |
caaattctaaactaattatttacatgaaaaggggtggccgttggatgtggatggcaaacat |
16930122 |
T |
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