View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20469_high_55 (Length: 238)
Name: NF20469_high_55
Description: NF20469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20469_high_55 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 10582579 - 10582801
Alignment:
| Q |
17 |
actttgatcatcattttgccattcagcctaaggtagaggtgtggaagatgatttgcttt-atctttatttttcatatttccttgatgacattccatcttt |
115 |
Q |
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| T |
10582579 |
actttgatcatcattttgccattcagcctaaggtagaggtgtggaagatcatttacttttatctttatttttcatatttccttgatgacagtccatcttt |
10582678 |
T |
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| Q |
116 |
gatcggaagcatatactctaacttgaataagcacaaaatacctcaaggacacaaatcaaaatatgtgcacaccaatttggatgtatacctttcaatgtta |
215 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
10582679 |
gatcggaagcatatactctaacttgaataagaacaaaatacctcaaggacacagatcaaaacatgtgcacaccaatttggatgtatacctttcaatgtta |
10582778 |
T |
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| Q |
216 |
ccttaccatctattttgtgtttc |
238 |
Q |
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||||||||||||||||||||||| |
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| T |
10582779 |
ccttaccatctattttgtgtttc |
10582801 |
T |
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