View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20469_high_57 (Length: 236)
Name: NF20469_high_57
Description: NF20469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20469_high_57 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 15 - 219
Target Start/End: Complemental strand, 7206353 - 7206149
Alignment:
| Q |
15 |
aatataatatccttcctaagaagttgtaataaattagcatacttacactgtcttttgaacaatgggagtaagtgcgtaaaaatggcgaagaaatattact |
114 |
Q |
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| T |
7206353 |
aatataatatccttcctaagaagttgtaataaattagcatacttacactgtcttttgaacaatgggagtaagtgcgtaaaaatggcgaagaaatattact |
7206254 |
T |
|
| Q |
115 |
cctaacaccaagaaccttctttcccattagccgataccacaacagcgcactgtttgcagaaccagaatctagcattagatatgtttaacaatgacataca |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
7206253 |
cctaacaccaagaaccttctttcccattagccgataccacaacagcgcactgtttgcagaaccagaatctaggattagatatgtttaacaatgacataca |
7206154 |
T |
|
| Q |
215 |
ttact |
219 |
Q |
| |
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||||| |
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|
| T |
7206153 |
ttact |
7206149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 15 - 211
Target Start/End: Complemental strand, 7212983 - 7212787
Alignment:
| Q |
15 |
aatataatatccttcctaagaagttgtaataaattagcatacttacactgtcttttgaacaatgggagtaagtgcgtaaaaatggcgaagaaatattact |
114 |
Q |
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||||||| ||||||||||| ||||||| ||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
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| T |
7212983 |
aatataacctccttcctaaggagttgtactaaatgagcatacttaccctgtcttttgaacaatgggcgtaagtgcgtaaaaatggcgaagaaatatcact |
7212884 |
T |
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| Q |
115 |
cctaacaccaagaaccttctttcccattagccgataccacaacagcgcactgtttgcagaaccagaatctagcattagatatgtttaacaatgacat |
211 |
Q |
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| T |
7212883 |
cgaaacaccaagaaccttctttcccatcagccgatgccacaatagtgcgctgtttgcagaaccagaatctaggattagatatgtttaacaatgacat |
7212787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 15 - 218
Target Start/End: Complemental strand, 7199578 - 7199375
Alignment:
| Q |
15 |
aatataatatccttcctaagaagttgtaataaattagcatacttacactgtcttttgaacaatgggagtaagtgcgtaaaaatggcgaagaaatattact |
114 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||||||||| || |||||||||||||||| ||| ||||||||||||||| ||||||||| | | |
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| T |
7199578 |
aatataatatccttcctaagaggttgtagtaaattagcatacttaccctttcttttgaacaatgggtgtaggtgcgtaaaaatggcaaagaaatatcagt |
7199479 |
T |
|
| Q |
115 |
cctaacaccaagaaccttctttcccattagccgataccacaacagcgcactgtttgcagaaccagaatctagcattagatatgtttaacaatgacataca |
214 |
Q |
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| |||||||||||||||||||||||| ||||||| |||||| || || |||||||||||| |||||||||| |||||||||||||||||||||||| || |
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| T |
7199478 |
cgaaacaccaagaaccttctttcccatcagccgatgccacaatagtgcgctgtttgcagaaacagaatctaggattagatatgtttaacaatgacatgca |
7199379 |
T |
|
| Q |
215 |
ttac |
218 |
Q |
| |
|
|||| |
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|
| T |
7199378 |
ttac |
7199375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 45 - 99
Target Start/End: Complemental strand, 45389890 - 45389836
Alignment:
| Q |
45 |
aaattagcatacttacactgtcttttgaacaatgggagtaagtgcgtaaaaatgg |
99 |
Q |
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|||||||||||||||| ||| ||||||||||||||| |||||| ||||||||||| |
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|
| T |
45389890 |
aaattagcatacttactctgccttttgaacaatgggcgtaagttcgtaaaaatgg |
45389836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 45 - 99
Target Start/End: Original strand, 17428328 - 17428382
Alignment:
| Q |
45 |
aaattagcatacttacactgtcttttgaacaatgggagtaagtgcgtaaaaatgg |
99 |
Q |
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|||||||||||||||| ||| ||||||||||||||| ||||| ||||||||||| |
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| T |
17428328 |
aaattagcatacttactctgccttttgaacaatgggcataagttcgtaaaaatgg |
17428382 |
T |
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