View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20469_high_7 (Length: 543)
Name: NF20469_high_7
Description: NF20469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20469_high_7 |
 | |
|
| [»] scaffold0039 (1 HSPs) |
| | |
|
| [»] scaffold0043 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 481; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 15 - 528
Target Start/End: Complemental strand, 24487303 - 24486788
Alignment:
| Q |
15 |
gaacctgtgtctatagggataccagtgattagtgataattcaccaagttccaccaccaactctgtaccaaatcaggttccaagtctacaatccaataaac |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24487303 |
gaacctgtgtctatagggataccagtgattagtgataattcacctagttccaccaccaactctgtaccaaatcaggttccaagtctacaatccaataaac |
24487204 |
T |
|
| Q |
115 |
cggtacagcgtgatcctatagtgacaaggtcacaacataatattttcaaacccaagaaaatgtttgttgttactaaacatgatttgcaagaaaatcttga |
214 |
Q |
| |
|
| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24487203 |
cagtacaacgtgatcctatagtgacaaggtcacaacataatattttcaaacccaagaaaatgtttgttgttactaaacatgatttgcaagaaaatcttga |
24487104 |
T |
|
| Q |
215 |
gccatccaatattactcaagcacttaaaataccacattggagagatgcttgttctgcagaatttaacgcacttatgaacaatggtacttggaccttggta |
314 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24487103 |
gccatccactattactcaagcacttaaaataccacattggagagatgctagttctgcagaatttaacgcacttatgaacaatggtacttggaccttggta |
24487004 |
T |
|
| Q |
315 |
cctcgtctagctcatacaaatgtagttggctgtaaatggttgtttcgaattaaaagaaatccggatggaagtgtgtcacggtacaaggcaaggttggttg |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24487003 |
cctcgtctagctcatacaaatgtagttggctgtaaatggttgtttcggattaaaagaaatccggatggaagtgtgtcacggtacaaggcaaggttggttg |
24486904 |
T |
|
| Q |
415 |
ccaaagggttcactc--acaccaggccttgattttaaggaaacttttgcaccagttgtgaaacctcaaaccattaaagtggttctcactttagcacttgg |
512 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24486903 |
ccaaagggttcactcaaacaccaggccttgattttaaggaaacttttgcaccagttgtgaaacctcaaaccattaaagtggttctcactttagcacttgg |
24486804 |
T |
|
| Q |
513 |
tcaaggatggtcttta |
528 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
24486803 |
tcaaggatggtcttta |
24486788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 15 - 528
Target Start/End: Complemental strand, 24495637 - 24495122
Alignment:
| Q |
15 |
gaacctgtgtctatagggataccagtgattagtgataattcaccaagttccaccaccaactctgtaccaaatcaggttccaagtctacaatccaataaac |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24495637 |
gaacctgtgtctatagggataccagtgattagtgataattcacctagttccaccaccaactctgtaccaaatcaggttccaagtctacaatccaataaac |
24495538 |
T |
|
| Q |
115 |
cggtacagcgtgatcctatagtgacaaggtcacaacataatattttcaaacccaagaaaatgtttgttgttactaaacatgatttgcaagaaaatcttga |
214 |
Q |
| |
|
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
24495537 |
cagtacaacgtgatcctatagtgacaaggtcacaacataatattttcaaacccaagaaaatgtttgtagttactaaacatgatttgcaagaaaatcttga |
24495438 |
T |
|
| Q |
215 |
gccatccaatattactcaagcacttaaaataccacattggagagatgcttgttctgcagaatttaacgcacttatgaacaatggtacttggaccttggta |
314 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24495437 |
gccatccactattactcaagcacttaaaataccacattggagagatgctagttctgcagaatttaacgcacttatgaacaatggtacttggaccttggta |
24495338 |
T |
|
| Q |
315 |
cctcgtctagctcatacaaatgtagttggctgtaaatggttgtttcgaattaaaagaaatccggatggaagtgtgtcacggtacaaggcaaggttggttg |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24495337 |
cctcgtctagctcatacaaatgtagttggctgtaaatggttgtttcggattaaaagaaatccggatggaagtgtgtcacggtacaaggcaaggttggttg |
24495238 |
T |
|
| Q |
415 |
ccaaagggttcactc--acaccaggccttgattttaaggaaacttttgcaccagttgtgaaacctcaaaccattaaagtggttctcactttagcacttgg |
512 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24495237 |
ccaaagggttcactcaaacaccaggccttgattttaaggaaacttttgcaccagttgtgaaacctcaaaccattaaagtggttctcactttagcacttgg |
24495138 |
T |
|
| Q |
513 |
tcaaggatggtcttta |
528 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
24495137 |
tcaaggatggtcttta |
24495122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 477; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 15 - 528
Target Start/End: Original strand, 34292581 - 34293096
Alignment:
| Q |
15 |
gaacctgtgtctatagggataccagtgattagtgataattcaccaagttccaccaccaactctgtaccaaatcaggttccaagtctacaatccaataaac |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34292581 |
gaacctgtgtctatagggataccagtgattagtgataattcacctagttccaccaccaactctgtaccaaatcaggttccaagtctacaatccaataaac |
34292680 |
T |
|
| Q |
115 |
cggtacagcgtgatcctatagtgacaaggtcacaacataatattttcaaacccaagaaaatgtttgttgttactaaacatgatttgcaagaaaatcttga |
214 |
Q |
| |
|
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
34292681 |
cagtacaacgtgatcctatagtgacaaggtcacaacataatattttcaaacccaagaaaatgtttgtggttactaaacatgatttgcaagaaaatcttga |
34292780 |
T |
|
| Q |
215 |
gccatccaatattactcaagcacttaaaataccacattggagagatgcttgttctgcagaatttaacgcacttatgaacaatggtacttggaccttggta |
314 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34292781 |
gccatccactattactcaagcacttaaaataccacattggagagatgctagttctgcagaatttaacgcacttatgaacaatggtacttggaccttggta |
34292880 |
T |
|
| Q |
315 |
cctcgtctagctcatacaaatgtagttggctgtaaatggttgtttcgaattaaaagaaatccggatggaagtgtgtcacggtacaaggcaaggttggttg |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34292881 |
cctcgtctagctcatacaaatgtagttggctgtaaatggttgtttcggattaaaagaaatccggatggaagtgtgtcacggtacaaggcaaggttggttg |
34292980 |
T |
|
| Q |
415 |
ccaaagggttcactc--acaccaggccttgattttaaggaaacttttgcaccagttgtgaaacctcaaaccattaaagtggttctcactttagcacttgg |
512 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34292981 |
ccaaagggttcactcaaacaccaggccttgattttaaggaaacttttgcaccagttgtgaaacctcaaaccattaaagtggttctcactttagcacttgg |
34293080 |
T |
|
| Q |
513 |
tcaaggatggtcttta |
528 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
34293081 |
tcaaggatggtcttta |
34293096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 328 - 509
Target Start/End: Original strand, 31346428 - 31346611
Alignment:
| Q |
328 |
atacaaatgtagttggctgtaaatggttgtttcgaattaaaagaaatccggatggaagtgtgtcacggtacaaggcaaggttggttgccaaagggttcac |
427 |
Q |
| |
|
|||||||| ||| ||| ||||||||||| ||| |||| ||||| ||||| ||||||||||| | | ||||| ||||| ||||| || |||||||| || |
|
|
| T |
31346428 |
atacaaatctagatggttgtaaatggttatttagaataaaaaggaatccagatggaagtgtagctagatacaaagcaagattggtcgctaaagggtttac |
31346527 |
T |
|
| Q |
428 |
tc--acaccaggccttgattttaaggaaacttttgcaccagttgtgaaacctcaaaccattaaagtggttctcactttagcact |
509 |
Q |
| |
|
|| || || || ||||||||||| ||||| || || || ||||| ||||| ||||| || ||||| ||||| ||||| ||||| |
|
|
| T |
31346528 |
tcaaactcctggtcttgattttaaagaaacgttcgctcctgttgttaaaccacaaacaatcaaagttgttctaactttggcact |
31346611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 146; Significance: 1e-76; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 123 - 509
Target Start/End: Complemental strand, 59608 - 59220
Alignment:
| Q |
123 |
cgtgatcctatagtgacaaggtcacaacataatattttcaaacccaagaaaatgtttgttgttactaaacatgatttgcaagaaaatcttgagccatcca |
222 |
Q |
| |
|
||||||||||| ||||||||||| || ||||||||||||||||| |||||||| ||| | ||||||||||||||||||||||||||||| ||||| | |
|
|
| T |
59608 |
cgtgatcctattgtgacaaggtctcatcataatattttcaaaccgaagaaaatattttcagccactaaacatgatttgcaagaaaatcttgaaccatcta |
59509 |
T |
|
| Q |
223 |
atattactcaagcacttaaaataccacattggagagatgcttgttctgcagaatttaacgcacttatgaacaatggtacttggaccttggtacctcgtct |
322 |
Q |
| |
|
||| |||||||| |||||||| ||||| ||||||||||||| || || |||||||| ||||| ||||| |||||||||||||||||||| || || | |
|
|
| T |
59508 |
ctataactcaagctcttaaaattgcacatcggagagatgcttgctcggctgaatttaatgcactgatgaataatggtacttggaccttggtgccacgaca |
59409 |
T |
|
| Q |
323 |
agctcatacaaatgtagttggctgtaaatggttgtttcgaattaaaagaaatccggatggaagtgtgtcacggtacaaggcaaggttggttgccaaaggg |
422 |
Q |
| |
|
| | ||||| ||| |||| ||||| ||||||||||| ||||||||||||| || ||||||||||| |||| || || || ||||||||||| ||||| |
|
|
| T |
59408 |
aacacataccaatttagtaggctgcaaatggttgttctgaattaaaagaaacccagatggaagtgtagcacgatataaagctaggttggttgcaaaagga |
59309 |
T |
|
| Q |
423 |
ttcactc--acaccaggccttgattttaaggaaacttttgcaccagttgtgaaacctcaaaccattaaagtggttctcactttagcact |
509 |
Q |
| |
|
||||||| || || || |||||||| |||||||| ||||| || ||||| ||||||||||| |||||||| || |||||| ||||||| |
|
|
| T |
59308 |
ttcactcaaactccgggtcttgatttcaaggaaacatttgctccggttgtaaaacctcaaacaattaaagttgtcctcactatagcact |
59220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 440 - 510
Target Start/End: Complemental strand, 82083 - 82013
Alignment:
| Q |
440 |
ttgattttaaggaaacttttgcaccagttgtgaaacctcaaaccattaaagtggttctcactttagcactt |
510 |
Q |
| |
|
|||||||||||||||| ||||| || ||||| ||||||||||| ||||| ||||| |||||||||||||| |
|
|
| T |
82083 |
ttgattttaaggaaacatttgcccctgttgtcaaacctcaaactattaaggtggtcatcactttagcactt |
82013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 256
Target Start/End: Complemental strand, 82384 - 82269
Alignment:
| Q |
141 |
aggtcacaacataatattttcaaacccaagaaaatgtttgttgttactaaacatgatttgcaagaaaatcttgagccatccaatattactcaagcactta |
240 |
Q |
| |
|
||||| ||| |||||||||| |||||||||||| | ||| | | ||||||||||| | || ||||||||||| ||||||| | | || |||||||| | |
|
|
| T |
82384 |
aggtcccaaaataatatttttaaacccaagaaattatttactatcactaaacatgagctacatgaaaatcttgaaccatccactgtgacacaagcactaa |
82285 |
T |
|
| Q |
241 |
aaataccacattggag |
256 |
Q |
| |
|
|||| || |||||||| |
|
|
| T |
82284 |
aaattcctcattggag |
82269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 440 - 510
Target Start/End: Complemental strand, 32323875 - 32323805
Alignment:
| Q |
440 |
ttgattttaaggaaacttttgcaccagttgtgaaacctcaaaccattaaagtggttctcactttagcactt |
510 |
Q |
| |
|
|||||||||||||||| ||||| || ||||| ||||||||||| ||||| ||||| |||||||||||||| |
|
|
| T |
32323875 |
ttgattttaaggaaacatttgcccctgttgtcaaacctcaaactattaaggtggtcatcactttagcactt |
32323805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 256
Target Start/End: Complemental strand, 32324176 - 32324061
Alignment:
| Q |
141 |
aggtcacaacataatattttcaaacccaagaaaatgtttgttgttactaaacatgatttgcaagaaaatcttgagccatccaatattactcaagcactta |
240 |
Q |
| |
|
||||| ||| |||||||||| |||||||||||| | ||| | | ||||||||||| | || ||||||||||| ||||||| | | || |||||||| | |
|
|
| T |
32324176 |
aggtcccaaaataatatttttaaacccaagaaattatttactatcactaaacatgagctacatgaaaatcttgaaccatccactgtgacacaagcactaa |
32324077 |
T |
|
| Q |
241 |
aaataccacattggag |
256 |
Q |
| |
|
|||| || |||||||| |
|
|
| T |
32324076 |
aaattcctcattggag |
32324061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 141 - 278
Target Start/End: Complemental strand, 18729212 - 18729075
Alignment:
| Q |
141 |
aggtcacaacataatattttcaaacccaagaaaatgtttgttgttactaaacatgatttgcaagaaaatcttgagccatccaatattactcaagcactta |
240 |
Q |
| |
|
||||| ||| |||||||||| |||||||||||| | ||| ||| || |||||||| | |||||||||||||| ||||||| | | || |||||||| | |
|
|
| T |
18729212 |
aggtctcaaaataatatttttaaacccaagaaattatttactgtcaccaaacatgagctacaagaaaatcttgaaccatccactgtgacacaagcactca |
18729113 |
T |
|
| Q |
241 |
aaataccacattggagagatgcttgttctgcagaattt |
278 |
Q |
| |
|
|||| || |||||||| | || ||||||| ||||||| |
|
|
| T |
18729112 |
aaattcctcattggaggaaggcatgttctgaagaattt |
18729075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 440 - 510
Target Start/End: Complemental strand, 18728911 - 18728841
Alignment:
| Q |
440 |
ttgattttaaggaaacttttgcaccagttgtgaaacctcaaaccattaaagtggttctcactttagcactt |
510 |
Q |
| |
|
|||||||||||||||| |||| || ||||| ||||||||||| ||||| ||||| |||||||||||||| |
|
|
| T |
18728911 |
ttgattttaaggaaacatttgtccctgttgtcaaacctcaaactattaaggtggtcatcactttagcactt |
18728841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 394 - 430
Target Start/End: Original strand, 50059919 - 50059955
Alignment:
| Q |
394 |
ggtacaaggcaaggttggttgccaaagggttcactca |
430 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
50059919 |
ggtacaaggcaagattggttgccaaaggattcactca |
50059955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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