View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20469_high_9 (Length: 533)

Name: NF20469_high_9
Description: NF20469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20469_high_9
NF20469_high_9
[»] scaffold0334 (1 HSPs)
scaffold0334 (8-520)||(11277-11804)
[»] chr3 (9 HSPs)
chr3 (9-516)||(17255540-17256059)
chr3 (245-385)||(16656811-16656951)
chr3 (50-238)||(12960018-12960206)
chr3 (233-329)||(18139569-18139665)
chr3 (9-354)||(17221931-17222276)
chr3 (243-354)||(12396076-12396187)
chr3 (57-148)||(18139414-18139505)
chr3 (414-464)||(18139786-18139836)
chr3 (8-53)||(12956512-12956557)
[»] chr4 (5 HSPs)
chr4 (222-520)||(19619154-19619467)
chr4 (9-385)||(15141188-15141564)
chr4 (12-200)||(19616857-19617045)
chr4 (216-336)||(19607778-19607898)
chr4 (245-354)||(13001619-13001728)
[»] chr8 (10 HSPs)
chr8 (12-385)||(17261281-17261653)
chr8 (21-385)||(20380250-20380615)
chr8 (411-506)||(20380671-20380766)
chr8 (274-338)||(16190294-16190358)
chr8 (247-347)||(18682267-18682367)
chr8 (267-347)||(18719563-18719643)
chr8 (247-347)||(18727829-18727929)
chr8 (419-506)||(17261130-17261217)
chr8 (21-86)||(16204737-16204802)
chr8 (289-354)||(18784871-18784936)
[»] scaffold0004 (5 HSPs)
scaffold0004 (12-385)||(28749-29112)
scaffold0004 (216-386)||(559-729)
scaffold0004 (400-516)||(396-515)
scaffold0004 (216-305)||(833-922)
scaffold0004 (9-51)||(1099-1141)
[»] chr7 (11 HSPs)
chr7 (12-355)||(13650734-13651077)
chr7 (210-359)||(13136092-13136241)
chr7 (226-385)||(13030221-13030380)
chr7 (228-325)||(333547-333644)
chr7 (222-346)||(21693459-21693583)
chr7 (9-94)||(21693676-21693761)
chr7 (274-347)||(22576103-22576176)
chr7 (385-519)||(13650525-13650659)
chr7 (379-517)||(21693258-21693396)
chr7 (21-121)||(13135900-13136000)
chr7 (414-454)||(22576227-22576267)
[»] scaffold0066 (2 HSPs)
scaffold0066 (216-390)||(58879-59053)
scaffold0066 (378-503)||(59071-59196)
[»] chr1 (2 HSPs)
chr1 (233-390)||(36135869-36136026)
chr1 (55-142)||(36136096-36136183)
[»] chr2 (8 HSPs)
chr2 (231-359)||(23236782-23236910)
chr2 (216-338)||(21367204-21367324)
chr2 (209-359)||(24848764-24848914)
chr2 (244-354)||(24378967-24379077)
chr2 (280-347)||(18939822-18939889)
chr2 (9-82)||(24379239-24379312)
chr2 (414-466)||(18939670-18939722)
chr2 (33-117)||(21367426-21367510)
[»] scaffold0026 (1 HSPs)
scaffold0026 (12-144)||(9375-9507)
[»] scaffold0435 (2 HSPs)
scaffold0435 (231-385)||(1135-1289)
scaffold0435 (9-121)||(910-1022)
[»] scaffold0084 (2 HSPs)
scaffold0084 (184-329)||(40240-40385)
scaffold0084 (8-121)||(40451-40564)
[»] scaffold0789 (1 HSPs)
scaffold0789 (243-359)||(5283-5399)
[»] scaffold0080 (1 HSPs)
scaffold0080 (184-359)||(22741-22916)
[»] scaffold0324 (1 HSPs)
scaffold0324 (243-351)||(1538-1646)
[»] scaffold0261 (1 HSPs)
scaffold0261 (233-359)||(2903-3029)
[»] scaffold1354 (2 HSPs)
scaffold1354 (243-347)||(1294-1398)
scaffold1354 (49-89)||(1552-1592)
[»] scaffold0175 (2 HSPs)
scaffold0175 (204-347)||(9503-9646)
scaffold0175 (21-88)||(9357-9423)
[»] chr6 (5 HSPs)
chr6 (299-383)||(18379874-18379958)
chr6 (278-329)||(22804116-22804167)
chr6 (12-53)||(13617939-13617980)
chr6 (414-466)||(21626940-21626992)
chr6 (278-354)||(21627085-21627161)
[»] scaffold0183 (1 HSPs)
scaffold0183 (245-354)||(978-1087)
[»] scaffold0120 (2 HSPs)
scaffold0120 (226-359)||(34965-35098)
scaffold0120 (226-359)||(43907-44040)
[»] scaffold0007 (2 HSPs)
scaffold0007 (278-338)||(145091-145151)
scaffold0007 (414-466)||(144927-144979)
[»] scaffold0032 (1 HSPs)
scaffold0032 (216-338)||(1896-2018)
[»] scaffold0315 (2 HSPs)
scaffold0315 (301-357)||(19950-20006)
scaffold0315 (414-454)||(19811-19851)


Alignment Details
Target: scaffold0334 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 8 - 520
Target Start/End: Complemental strand, 11804 - 11277
Alignment:
Q  8 aagcataggagaaatgtctgagatgagaagcaaagtctgtgaaagattgcctgctgatcaccctttccaaccaccaatgatcaaacctttgagttatgtt 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11804 aagcataggagaaatgtctgagatgagaagcaaagtctgtgaaagactgcctgctgatcaccctttccaaccaccaatgatcaaacctttgagttatgtt 11705  T
Q  108 cctgctgatgtagatgtggttaatgaatcagtagtgcctgaacctgaaaatatcattgattcatcgtgtcatccctcttcatccaaccaaacattagaaa 207  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11704 cctgctgatgtagatgtggttaatgaatcagcagtgcctgaacctgaaaatatcattgattcatcgtgtcatccctcttcatccaaccaaacattagaaa 11605  T
Q  208 tatcaattttagaaaatctggtcagtcactattctggtgaattaccaggtgttgagtcaaatctagaaagagcctctgaggtagcttctggtgaagttac 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11604 tatcaattttagaaaatctggtcagtcactattctggtgaattaccaggtgttgagtcaaatctagaaagagcctctgaggtagcttctggtgaagttac 11505  T
Q  308 tttagaaagcccccaacaacaagaaccaaacctacaaatgacctcaacaaccctgccaaatatctctgttcctg---------------aacatattgag 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               |||||||||||    
T  11504 tttagaaagcccccaacaacaagaaccaaacctacaaatgacctcaacaaccctgccaaatatctctgttcctgaacaaaatgtccctgaacatattgag 11405  T
Q  393 tctcaatcatctttagagaaagtcagtgaacctgattttatgatcacatcggaagattctgacgatgaggttgaattatctaactcatcctctgtgatca 492  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11404 tctcaatcatctttagagaaagtcagtgaacctgattttatgatcacatcggaagattctgacgatgaggttgaattatctaactcatcctctgtgatca 11305  T
Q  493 taacttctgtttctgaacaaccttctga 520  Q
    ||||||||||||||||||||||||||||    
T  11304 taacttctgtttctgaacaaccttctga 11277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 9 - 516
Target Start/End: Original strand, 17255540 - 17256059
Alignment:
Q  9 agcataggagaaatgtctgagatgagaagcaaagtctgtgaaagattgcctgctgatcaccctttccaaccaccaatgatcaaacctttgagttatgttc 108  Q
    |||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | || | |||||    
T  17255540 agcataggtgaaatgtctgagatgagaaacaaagtctgtgaaagactgcctgctgatcaccctttccaaccaccaatgatcaaacctcttagctttgttc 17255639  T
Q  109 ctgctgatgtagatgtggttaatgaatcagtagtgcctgaacctgaaaatatcattgattcatcgtgtcatccctcttcatccaaccaaacattagaaat 208  Q
    ||||||||| ||| |||||||||||| ||| ||||||||| |||||||| |||||| | ||||| | ||||||| ||||| | |||||||| | |||||     
T  17255640 ctgctgatgcagaggtggttaatgaaccagcagtgcctgagcctgaaaacatcatttaatcatcatctcatcccacttcaactaaccaaacttcagaaac 17255739  T
Q  209 atcaattttagaaaatctggtcagtcactattctggtgaattaccaggtgttgagtcaaatctagaaagagcctctgaggtagcttctggtgaagttact 308  Q
    || | ||||||| |||||||||| ||| || || |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||    
T  17255740 attagttttagagaatctggtcaatcattactcaggtgaattaccaggtgttgagtcaaatctagatagagcctttgaggtagcttctggcgaagttact 17255839  T
Q  309 ttagaaagcccccaacaacaagaaccaaacctacaaatgacctcaacaaccctgccaaatatctctgttcctgaa---------------catattgagt 393  Q
    ||| ||| |||||||||||||  |||||||||||| ||| ||||||||| | ||| | |||||  ||||||||||               || |||||||    
T  17255840 ttataaatcccccaacaacaaccaccaaacctacagatggcctcaacaagcttgctagatatccttgttcctgaacaaactgtctctgatcacattgagt 17255939  T
Q  394 ctcaatcatctttagagaaagtcagtgaacctgattttatgatcacatcggaagattctgacgatgaggttgaattatctaactcatcctctgtgatcat 493  Q
    |||  ||||||||||| ||||| ||||||||| |||||||||||||||| ||||||| ||| |||||||||||| ||||||||||||||||||   ||||    
T  17255940 ctccttcatctttagaaaaagtaagtgaacctaattttatgatcacatcagaagattatgatgatgaggttgaagtatctaactcatcctctg---tcat 17256036  T
Q  494 aacttctgtttctgaacaacctt 516  Q
    |||||||||| |||  |||||||    
T  17256037 aacttctgttcctggtcaacctt 17256059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 245 - 385
Target Start/End: Original strand, 16656811 - 16656951
Alignment:
Q  245 tgaattaccaggtgttgagtcaaatctagaaagagcctctgaggtagcttctggtgaagttactttagaaagcccccaacaacaagaaccaaacctacaa 344  Q
    |||||||||||| ||||||||||||  ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||| |||||    
T  16656811 tgaattaccaggagttgagtcaaatacagaaagagcctctgaggtagcttatgatgaagttactttagaaagcccccaacaacaagcaccaaacgtacaa 16656910  T
Q  345 atgacctcaacaaccctgccaaatatctctgttcctgaaca 385  Q
    ||||||||||||||||| ||| ||  |||||||||||||||    
T  16656911 atgacctcaacaaccctaccagatgcctctgttcctgaaca 16656951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 50 - 238
Target Start/End: Original strand, 12960018 - 12960206
Alignment:
Q  50 aagattgcctgctgatcaccctttccaaccaccaatgatcaaacctttgagttatgttcctgctgatgtagatgtggttaatgaatcagtagtgcctgaa 149  Q
    |||| ||||| |||||||||||||||||||||||||||| |||||| | || | |||||||||||||| ||| ||||||| |||| ||  |||||||||     
T  12960018 aagactgcctactgatcaccctttccaaccaccaatgataaaacctcttaggtttgttcctgctgatgcagaggtggttagtgaaccaacagtgcctgag 12960117  T
Q  150 cctgaaaatatcattgattcatcgtgtcatccctcttcatccaaccaaacattagaaatatcaattttagaaaatctggtcagtcacta 238  Q
    ||||| || || ||||| ||||| | ||||||||||||| | |||||||| | ||||| | || ||||||| |||||||||| ||||||    
T  12960118 cctgataacattattgaatcatcatctcatccctcttcaactaaccaaacttcagaaacaacagttttagagaatctggtcaatcacta 12960206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 233 - 329
Target Start/End: Original strand, 18139569 - 18139665
Alignment:
Q  233 tcactattctggtgaattaccaggtgttgagtcaaatctagaaagagcctctgaggtagcttctggtgaagttactttagaaagcccccaacaacaa 329  Q
    ||||||||||||||||||  ||||||||||||| ||   |||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||    
T  18139569 tcactattctggtgaattgacaggtgttgagtccaactcagaaagagcccctgaggtagcttctggtgaagttactttagaaagtctccaacaacaa 18139665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 9 - 354
Target Start/End: Original strand, 17221931 - 17222276
Alignment:
Q  9 agcataggagaaatgtctgagatgagaagcaaagtctgtgaaagattgcctgctgatcaccctttccaaccaccaatgatcaaacctttgagttatgttc 108  Q
    |||||||| ||||||||| ||||||||| |||||| | ||||||||| |||||| | |||||||| ||||||||||||||  ||||| | |||| |||||    
T  17221931 agcataggtgaaatgtctcagatgagaaacaaagtttttgaaagattacctgctaaccacccttttcaaccaccaatgattgaacctcttagttttgttc 17222030  T
Q  109 ctgctgatgtagatgtggttaatgaatcagtagtgcctgaacctgaaaatatcattgattcatcgtgtcatccctcttcatccaaccaaacattagaaat 208  Q
    ||||||||| ||| ||  |   ||||  |||||  ||| |   |  |||   || ||| ||| | | |||||||  |||||| | ||| || | ||||      
T  17222031 ctgctgatgcagaggtcataggtgaacaagtaggtcctaagtatacaaactacaatgaatcaccatctcatcccaattcatctacccatacttaagaacc 17222130  T
Q  209 atcaattttagaaaatctggtcagtcactattctggtgaattaccaggtgttgagtcaaatctagaaagagcctctgaggtagcttctggtgaagttact 308  Q
     ||| |||| || |||||||||| |||| | || |||||||||||||||  |||| ||| |||||| | ||||| ||| ||||||| | ||||| |||||    
T  17222131 ttcagttttggagaatctggtcaatcaccactcaggtgaattaccaggttgtgaggcaagtctagagaaagcctatgaagtagcttttagtgaaattact 17222230  T
Q  309 ttagaaagcccccaacaacaagaaccaaacctacaaatgacctcaa 354  Q
    ||||||| |||||||||||||| ||| ||| |||||||| ||||||    
T  17222231 ttagaaaacccccaacaacaagcacctaacatacaaatggcctcaa 17222276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 354
Target Start/End: Original strand, 12396076 - 12396187
Alignment:
Q  243 ggtgaattaccaggtgttgagtcaaatctagaaagagcctctgaggtagcttctggtgaagttactttagaaagcccccaacaacaagaaccaaacctac 342  Q
    ||||||||||||||| ||  | ||||   ||||| ||||||||| ||||||| || |||||||  || | ||||||||||||||||  |||| ||| |||    
T  12396076 ggtgaattaccaggttttaggccaaactcagaaatagcctctgaagtagcttttgatgaagttgtttcaaaaagcccccaacaacatcaaccgaacttac 12396175  T
Q  343 aaatgacctcaa 354  Q
    ||||| ||||||    
T  12396176 aaatggcctcaa 12396187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 148
Target Start/End: Original strand, 18139414 - 18139505
Alignment:
Q  57 cctgctgatcaccctttccaaccaccaatgatcaaacctttgagttatgttcctgctgatgtagatgtggttaatgaatcagtagtgcctga 148  Q
    ||||||||||| | ||| ||| ||||| |||||||| || | |||| ||| ||||||| | |||| |||||||||||||||| ||| |||||    
T  18139414 cctgctgatcatctttttcaaacaccagtgatcaaaactcttagttttgtacctgctggtatagaagtggttaatgaatcagcagtacctga 18139505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 414 - 464
Target Start/End: Original strand, 18139786 - 18139836
Alignment:
Q  414 gtcagtgaacctgattttatgatcacatcggaagattctgacgatgaggtt 464  Q
    |||||||||||||| |||||||||||||| |||| |||||| | |||||||    
T  18139786 gtcagtgaacctgactttatgatcacatcagaagcttctgatgttgaggtt 18139836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 12956512 - 12956557
Alignment:
Q  8 aagcataggagaaatgtctgagatgagaagcaaagtctgtgaaaga 53  Q
    |||||||||  | |||||||||||||||| ||||||||||||||||    
T  12956512 aagcataggcaatatgtctgagatgagaaacaaagtctgtgaaaga 12956557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 180; Significance: 6e-97; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 222 - 520
Target Start/End: Original strand, 19619154 - 19619467
Alignment:
Q  222 aatctggtcagtcactattctggtgaattaccaggtgttgagtcaaatctagaaagagcctctgaggtagcttctggtgaagttactttagaaagccccc 321  Q
    |||||||| |||||||||||||||||||||||||| |||||||| ||| |||| ||||||| |||||||||||||| |||||||||||||||||||||||    
T  19619154 aatctggttagtcactattctggtgaattaccaggcgttgagtcgaatgtagagagagcctatgaggtagcttctgatgaagttactttagaaagccccc 19619253  T
Q  322 aacaacaagaaccaaacctacaaatgacctcaacaaccctgccaaatatctctgttcctga---------------acatattgagtctcaatcatcttt 406  Q
    |||| |||| |||||||||||||||  ||||||||||| || || ||||||||||||||||               ||||||| ||||||||||||||||    
T  19619254 aacagcaagcaccaaacctacaaatagcctcaacaaccttgtcagatatctctgttcctgaacaaactatctctgaacatattaagtctcaatcatcttt 19619353  T
Q  407 agagaaagtcagtgaacctgattttatgatcacatcggaagattctgacgatgaggttgaattatctaactcatcctctgtgatcataacttctgtttct 506  Q
    ||||||||| ||||||| |||||||||||||||||  ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  19619354 agagaaagtgagtgaacatgattttatgatcacataagaagattctgatggtgaggttgaattatctaactcatcctctgtgatcataacttctgtttct 19619453  T
Q  507 gaacaaccttctga 520  Q
    ||||||||||||||    
T  19619454 gaacaaccttctga 19619467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 9 - 385
Target Start/End: Complemental strand, 15141564 - 15141188
Alignment:
Q  9 agcataggagaaatgtctgagatgagaagcaaagtctgtgaaagattgcctgctgatcaccctttccaaccaccaatgatcaaacctttgagttatgttc 108  Q
    |||||||| ||||| ||| ||||||||   || || ||||||||| | |||||| | || ||||| |||||||| ||||| |||||  | |||| |||||    
T  15141564 agcataggtgaaatttctcagatgagagttaatgtttgtgaaagactacctgctaaccatccttttcaaccacctatgattaaaccacttagttttgttc 15141465  T
Q  109 ctgctgatgtagatgtggttaatgaatcagtagtgcctgaacctgaaaatatcattgattcatcgtgtcatccctcttcatccaaccaaacattagaaat 208  Q
    ||| ||||| ||| ||  |   ||||  |||||  | |||  ||| |||| ||| ||| ||||| | |||||||  |||| | | |||||| ||||||      
T  15141464 ctgatgatgcagaggttataggtgaacaagtaggtcatgagtctgcaaatttcaatgaatcatcatctcatcccaattcaactacccaaactttagaacc 15141365  T
Q  209 atcaattttagaaaatctggtcagtcactattctggtgaattaccaggtgttgagtcaaatctagaaagagcctctgaggtagcttctggtgaagttact 308  Q
    |||  |||| || |||||||||| |||||| || |||||||||||||||  |||| | |||||||||||||||||||| |||||||||||||||||||||    
T  15141364 atctgttttggagaatctggtcaatcactactcaggtgaattaccaggttgtgagcctaatctagaaagagcctctgaagtagcttctggtgaagttact 15141265  T
Q  309 ttagaaagcccccaacaacaagaaccaaacctacaaatgacctcaacaaccctgccaaatatctctgttcctgaaca 385  Q
    |||||||||||||||||||||| ||||||| |||||||| |||||||||||   |||||||||  ||||||||||||    
T  15141264 ttagaaagcccccaacaacaagcaccaaacttacaaatggcctcaacaacctgtccaaatatccatgttcctgaaca 15141188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 12 - 200
Target Start/End: Original strand, 19616857 - 19617045
Alignment:
Q  12 ataggagaaatgtctgagatgagaagcaaagtctgtgaaagattgcctgctgatcaccctttccaaccaccaatgatcaaacctttgagttatgttcctg 111  Q
    ||||||||||||||||| ||||||| |||||||||||||||| ||| || ||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  19616857 ataggagaaatgtctgaaatgagaaacaaagtctgtgaaagactgcttgttgatcaccctttccaaccaccaatgatcaaaccattgagttttgttcctg 19616956  T
Q  112 ctgatgtagatgtggttaatgaatcagtagtgcctgaacctgaaaatatcattgattcatcgtgtcatccctcttcatccaaccaaaca 200  Q
     ||||| | | ||||||| |||| ||| | ||||||| ||||  || || ||||| || || | ||||||||||||||| |||||||||    
T  19616957 atgatgcataggtggttagtgaaccagcaatgcctgagcctgtcaacataattgaatcttcatctcatccctcttcatcaaaccaaaca 19617045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 216 - 336
Target Start/End: Original strand, 19607778 - 19607898
Alignment:
Q  216 ttagaaaatctggtcagtcactattctggtgaattaccaggtgttgagtcaaatctagaaagagcctctgaggtagcttctggtgaagttactttagaaa 315  Q
    ||||| |||||||  |||||||| || |||||| |||||||||||||| || ||||||||||||||| ||| |||||||||| |||||||||||||| ||    
T  19607778 ttagagaatctggctagtcactactcaggtgaactaccaggtgttgagccatatctagaaagagcctttgaagtagcttctgatgaagttactttagcaa 19607877  T
Q  316 gcccccaacaacaagaaccaa 336  Q
    |||||||||||| || |||||    
T  19607878 gcccccaacaaccagcaccaa 19607898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 245 - 354
Target Start/End: Original strand, 13001619 - 13001728
Alignment:
Q  245 tgaattaccaggtgttgagtcaaatctagaaagagcctctgaggtagcttctggtgaagttactttagaaagcccccaacaacaagaaccaaacctacaa 344  Q
    ||||||||||||  ||||  | |||||||||| ||||||||| |||| ||||| |||||||||||||||||||||||||||||| | ||||||| |||||    
T  13001619 tgaattaccaggatttgaacctaatctagaaaaagcctctgaagtagattctgatgaagttactttagaaagcccccaacaacatgcaccaaacttacaa 13001718  T
Q  345 atgacctcaa 354  Q
    ||| ||||||    
T  13001719 atggcctcaa 13001728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 174; Significance: 2e-93; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 12 - 385
Target Start/End: Complemental strand, 17261653 - 17261281
Alignment:
Q  12 ataggagaaatgtctgagatgagaagcaaagtctgtgaaagattgcctgctgatcaccctttccaaccaccaatgatcaaacctttgagttatgttcctg 111  Q
    ||||||||||||| ||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||    
T  17261653 ataggagaaatgtttgagatgagaaacaaagtctgtgaaagactgcatgctgatcaccctttccaaccaccaatgatcaaacctttgagttttgttcgtg 17261554  T
Q  112 ctgatgtagatgtggttaatgaatcagtagtgcctgaacctgaaaatatcattgattcatcgtgtcatccctcttcatccaaccaaacattagaaatatc 211  Q
    |||||| |||||||||||||||||||| ||||||| | | ||  || || ||||| || || | ||||||||||||| | |||||||||| ||||| |||    
T  17261553 ctgatgcagatgtggttaatgaatcagaagtgcctaagcatgtcaacataattgaatcttcatctcatccctcttcaacaaaccaaacatcagaaacatc 17261454  T
Q  212 aattttagaaaatctggtcagtcactattctggtgaattaccaggtgttgagtcaaatctagaaagagcctctgaggtagcttctggtgaagttacttta 311  Q
      | ||||| |||||||||| ||||| |||||||||||||||||||| || |||||| ||||||| ||||| |||||||||||||| |||| || |||||    
T  17261453 tgtcttagagaatctggtcaatcactgttctggtgaattaccaggtg-tgggtcaaacctagaaaaagcctatgaggtagcttctgatgaatttgcttta 17261355  T
Q  312 gaaagcccccaacaacaagaaccaaacctacaaatgacctcaacaaccctgccaaatatctctgttcctgaaca 385  Q
    ||||||||||||||||| | |||||   |||||||| ||||||| ||| | ||| || ||||||||| ||||||    
T  17261354 gaaagcccccaacaacatgcaccaagtgtacaaatggcctcaactaccttaccagatgtctctgttcttgaaca 17261281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 21 - 385
Target Start/End: Original strand, 20380250 - 20380615
Alignment:
Q  21 atgtctgagatgagaagcaaagtctgtgaaagattgcctgctgatcaccctttccaaccaccaatgatcaaacctttgagttatgttcctgctgatgtag 120  Q
    |||| ||||||||||| ||||||||| |||||| | ||||||||||||||||||||||||||||||||  ||||| | || | |||||||||||||||||    
T  20380250 atgtttgagatgagaaacaaagtctgcgaaagactacctgctgatcaccctttccaaccaccaatgatagaacctctaaggtttgttcctgctgatgtag 20380349  T
Q  121 atgtggttaatgaatcagtagtgcctgaacctgaaaatatcattgattcatcgtgtcatccctcttcatccaaccaaacatt-agaaatatcaattttag 219  Q
    | |||||||||||| ||| ||||||||| |||| |||  | ||||| || || | ||||||| ||||||| ||| ||| | | |||||  ||| ||||||    
T  20380350 aggtggttaatgaaccagcagtgcctgagcctgtaaaattaattgaatcttcatctcatcccacttcatctaacaaaaaaatcagaaacttcagttttag 20380449  T
Q  220 aaaatctggtcagtcactattctggtgaattaccaggtgttgagtcaaatctagaaagagcctctgaggtagcttctggtgaagttactttagaaagccc 319  Q
    | |||||||||| |||||| || | |||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  20380450 agaatctggtcaatcactactcagatgaatttccaggtgttgagtcaaatctagaaagagcctttgaggtagcttctgatgaagttactttagaaagccc 20380549  T
Q  320 ccaacaacaagaaccaaacctacaaatgacctcaacaaccctgccaaatatctctgttcctgaaca 385  Q
    ||||||||||| |||||||||||||||  |||||||||||   |||| | ||||||||||| ||||    
T  20380550 ccaacaacaagcaccaaacctacaaatagcctcaacaacctgcccaactgtctctgttcctaaaca 20380615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 411 - 506
Target Start/End: Original strand, 20380671 - 20380766
Alignment:
Q  411 aaagtcagtgaacctgattttatgatcacatcggaagattctgacgatgaggttgaattatctaactcatcctctgtgatcataacttctgtttct 506  Q
    ||||||| ||||| |||||||||||||||||| |||| |||||| ||||| |||||  ||||||||||||| ||| || |||||||||||||||||    
T  20380671 aaagtcattgaacttgattttatgatcacatcagaaggttctgatgatgaagttgatgtatctaactcatcttctatggtcataacttctgtttct 20380766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 274 - 338
Target Start/End: Complemental strand, 16190358 - 16190294
Alignment:
Q  274 aaagagcctctgaggtagcttctggtgaagttactttagaaagcccccaacaacaagaaccaaac 338  Q
    ||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||| |||||||    
T  16190358 aaagagcctctgaagtagcttctgatgaagttgctttagaaagcccccaacaacaagcaccaaac 16190294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 247 - 347
Target Start/End: Original strand, 18682267 - 18682367
Alignment:
Q  247 aattaccaggtgttgagtcaaatctagaaagagcctctgaggtagcttctggtgaagttactttagaaagcccccaacaacaagaaccaaacctacaaat 346  Q
    ||||||| ||||||||  | ||| |||||| ||||||||| |||||||||| || |||||||||||||||| | |||||||||| |||||||  ||||||    
T  18682267 aattacctggtgttgaacccaatatagaaaaagcctctgaagtagcttctgatggagttactttagaaagctcacaacaacaagcaccaaactcacaaat 18682366  T
Q  347 g 347  Q
    |    
T  18682367 g 18682367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 267 - 347
Target Start/End: Original strand, 18719563 - 18719643
Alignment:
Q  267 aatctagaaagagcctctgaggtagcttctggtgaagttactttagaaagcccccaacaacaagaaccaaacctacaaatg 347  Q
    |||||||||| ||||||||| |||||||||| || |||||||||||||||| | |||||||||| |||||||  |||||||    
T  18719563 aatctagaaaaagcctctgaagtagcttctgatggagttactttagaaagctcacaacaacaagcaccaaactcacaaatg 18719643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 247 - 347
Target Start/End: Original strand, 18727829 - 18727929
Alignment:
Q  247 aattaccaggtgttgagtcaaatctagaaagagcctctgaggtagcttctggtgaagttactttagaaagcccccaacaacaagaaccaaacctacaaat 346  Q
    ||||||| ||||||||  | ||| |||||| ||||||||| |||||||||| || |||||||||||||||| | |||||||||| |||||||  ||||||    
T  18727829 aattacctggtgttgaacccaatatagaaaaagcctctgaagtagcttctgatggagttactttagaaagctcacaacaacaagcaccaaactcacaaat 18727928  T
Q  347 g 347  Q
    |    
T  18727929 g 18727929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 419 - 506
Target Start/End: Complemental strand, 17261217 - 17261130
Alignment:
Q  419 tgaacctgattttatgatcacatcggaagattctgacgatgaggttgaattatctaactcatcctctgtgatcataacttctgtttct 506  Q
    |||||||||||||||||||||||| |||| || ||| ||||| |||||  ||| ||||||||| |||||| ||||||||||| |||||    
T  17261217 tgaacctgattttatgatcacatcagaaggttttgatgatgaagttgatgtatttaactcatcttctgtggtcataacttctatttct 17261130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 21 - 86
Target Start/End: Complemental strand, 16204802 - 16204737
Alignment:
Q  21 atgtctgagatgagaagcaaagtctgtgaaagattgcctgctgatcaccctttccaaccaccaatg 86  Q
    |||||||||||||||| |||||||||||||||| | ||  || | || ||||||||||||||||||    
T  16204802 atgtctgagatgagaatcaaagtctgtgaaagactaccccctaaccatcctttccaaccaccaatg 16204737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 354
Target Start/End: Complemental strand, 18784936 - 18784871
Alignment:
Q  289 tagcttctggtgaagttactttagaaagcccccaacaacaagaaccaaacctacaaatgacctcaa 354  Q
    ||||||||| |||||||   | |||||||||||||||||| ||||||||| || ||||| ||||||    
T  18784936 tagcttctgatgaagttgtgtcagaaagcccccaacaacatgaaccaaacttaaaaatggcctcaa 18784871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 150; Significance: 5e-79; HSPs: 5)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 12 - 385
Target Start/End: Original strand, 28749 - 29112
Alignment:
Q  12 ataggagaaatgtctgagatgagaagcaaagtctgtgaaagattgcctgctgatcaccctttccaaccaccaatgatcaaacctttgagttatgttcctg 111  Q
    ||||| ||||| ||||||||||||| | | || |||||||||   |||| ||||||||| |||| ||||||||||||||||||||| |||| |||| |||    
T  28749 ataggtgaaatatctgagatgagaaaccaggtatgtgaaagacatcctgttgatcacccattccgaccaccaatgatcaaacctttaagttttgttactg 28848  T
Q  112 ctgatgtagatgtggttaatgaatcagtagtgcctgaacctgaaaatatcattgattcatcgtgtcatccctcttcatccaaccaaacattagaaatatc 211  Q
    |||||| ||| ||||||| |||| ||| ||||||||||| ||| ||||| ||||||||||| | ||||||||||||||| ||| | |         ||||    
T  28849 ctgatgcagaagtggttactgaaccagcagtgcctgaacttgagaatataattgattcatcatctcatccctcttcatcaaactata---------tatc 28939  T
Q  212 aattttagaaaatctggtcagtcactattctggtgaattaccaggtgttgagtcaaatctagaaagagcctctgaggtagcttctggtgaagttacttta 311  Q
      | ||||| ||||||||| ||||| | ||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||| ||||| | |||||    
T  28940 tgtcttagagaatctggtctgtcaccactctggtgaactaccaggtgttgagtcaactctagaaagagcctctgagggagcttctgatgaag-tgcttta 29038  T
Q  312 gaaagcccccaacaacaagaaccaaacctacaaatgacctcaacaaccctgccaaatatctctgttcctgaaca 385  Q
    ||||||||||||||||||| ||||||| ||||||| |||||||||||||| ||| || ||||||||||||||||    
T  29039 gaaagcccccaacaacaagcaccaaacgtacaaataacctcaacaacccttccagatgtctctgttcctgaaca 29112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 216 - 386
Target Start/End: Complemental strand, 729 - 559
Alignment:
Q  216 ttagaaaatctggtcagtcactattctggtgaattaccaggtgttgagtcaaatctagaaagagcctctgaggtagcttctggtgaagttactttagaaa 315  Q
    ||||| |||||||||| |||||||||||||||||||||| |||||||| | || ||| | | ||||||||| |||| |||| |||||||| |||||||||    
T  729 ttagagaatctggtcaatcactattctggtgaattaccatgtgttgagcctaacctacagaaagcctctgaagtagtttctagtgaagttgctttagaaa 630  T
Q  316 gcccccaacaacaagaaccaaacctacaaatgacctcaacaaccctgc-caaatatctctgttcctgaacat 386  Q
     |||||||||||||| ||||||| |||||||| ||||||||||  ||| || || |||||||||||||||||    
T  629 tcccccaacaacaagcaccaaacgtacaaatggcctcaacaact-tgctcagatgtctctgttcctgaacat 559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 400 - 516
Target Start/End: Complemental strand, 515 - 396
Alignment:
Q  400 catctttagagaaagtcagtgaacctgattttatgatcacatcggaagattctgacgatgaggttgaattatctaactcatcctc---tgtgatcataac 496  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||||||||||| | |||||||||| | ||||||||||| ||   |||| |||||||    
T  515 catctttagaaaaagtcagtgaacctgattttatgatcacatcagaagattctgatgttgaggttgaagtttctaactcatcttcttatgtggtcataac 416  T
Q  497 ttctgtttctgaacaacctt 516  Q
    ||||||| |||  |||||||    
T  415 ttctgttcctggtcaacctt 396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 216 - 305
Target Start/End: Complemental strand, 922 - 833
Alignment:
Q  216 ttagaaaatctggtcagtcactattctggtgaattaccaggtgttgagtcaaatctagaaagagcctctgaggtagcttctggtgaagtt 305  Q
    ||||| |||||||||| |||||||||||||||||||||| |||||||| | || ||| | | ||||||||| ||||||||| ||||||||    
T  922 ttagagaatctggtcaatcactattctggtgaattaccatgtgttgagcctaacctacagaaagcctctgaagtagcttctagtgaagtt 833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 1141 - 1099
Alignment:
Q  9 agcataggagaaatgtctgagatgagaagcaaagtctgtgaaa 51  Q
    |||||||| ||||||||||||||||||| ||||||| ||||||    
T  1141 agcataggtgaaatgtctgagatgagaaacaaagtcagtgaaa 1099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 140; Significance: 4e-73; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 12 - 355
Target Start/End: Complemental strand, 13651077 - 13650734
Alignment:
Q  12 ataggagaaatgtctgagatgagaagcaaagtctgtgaaagattgcctgctgatcaccctttccaaccaccaatgatcaaacctttgagttatgttcctg 111  Q
    ||||||||||||| ||||||||||| |||||| ||||||||| |  ||| ||||||||||| | |||||||||||||||||||||| |||| ||||||||    
T  13651077 ataggagaaatgtttgagatgagaaacaaagtttgtgaaagactatctgttgatcacccttcctaaccaccaatgatcaaacctttaagttttgttcctg 13650978  T
Q  112 ctgatgtagatgtggttaatgaatcagtagtgcctgaacctgaaaatatcattgattcatcgtgtcatccctcttcatccaaccaaacattagaaatatc 211  Q
    |||||| ||| ||||||| |||| ||| |||| |||| ||||| || || ||||| ||||| | ||||| |||||||| |||||||||||||| || |||    
T  13650977 ctgatgcagaagtggttagtgaaccagcagtgtctgagcctgataacataattgagtcatcatctcatctctcttcattcaaccaaacattaggaacatc 13650878  T
Q  212 aattttagaaaatctggtcagtcactattctggtgaattaccaggtgttgagtcaaatctagaaagagcctctgaggtagcttctggtgaagttacttta 311  Q
      | ||||| |||||||  |||||||| || |||||| ||||||||||| || |  ||||||||| ||||||| | |||||| ||| |||||||||||||    
T  13650877 ggtcttagagaatctggctagtcactactcaggtgaactaccaggtgttaagccctatctagaaaaagcctctaaagtagctcctgatgaagttacttta 13650778  T
Q  312 gaaagcccccaacaacaagaaccaaacctacaaatgacctcaac 355  Q
    ||||||||||||||||||| ||||||   ||||||| |||||||    
T  13650777 gaaagcccccaacaacaagcaccaaatgcacaaatggcctcaac 13650734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 210 - 359
Target Start/End: Original strand, 13136092 - 13136241
Alignment:
Q  210 tcaattttagaaaatctggtcagtcactattctggtgaattaccaggtgttgagtcaaatctagaaagagcctctgaggtagcttctggtgaagttactt 309  Q
    ||||| ||||| |||||||  |||||||| ||  ||||| |||||||||||||| || ||||||||||||||||||| |||||||||| | |||||||||    
T  13136092 tcaatattagataatctggctagtcactactcaagtgaactaccaggtgttgagccatatctagaaagagcctctgaagtagcttctgattaagttactt 13136191  T
Q  310 tagaaagcccccaacaacaagaaccaaacctacaaatgacctcaacaacc 359  Q
    ||||||||||||||||||||| ||||||| |||| ||| ||||| |||||    
T  13136192 tagaaagcccccaacaacaagcaccaaacttacagatggcctcatcaacc 13136241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 226 - 385
Target Start/End: Original strand, 13030221 - 13030380
Alignment:
Q  226 tggtcagtcactattctggtgaattaccaggtgttgagtcaaatctagaaagagcctctgaggtagcttctggtgaagttactttagaaagcccccaaca 325  Q
    |||||| |||||| || |||||||||||||||  |||| |  ||||||||| ||||||||| ||||||||| |||||||||||||||||| |||||||||    
T  13030221 tggtcaatcactactcaggtgaattaccaggttgtgagccttatctagaaaaagcctctgaagtagcttctagtgaagttactttagaaaacccccaaca 13030320  T
Q  326 acaagaaccaaacctacaaatgacctcaacaaccctgccaaatatctctgttcctgaaca 385  Q
    ||||| ||||||| |||||||| ||||| |||||   ||| ||||| |||||| ||||||    
T  13030321 acaagcaccaaacttacaaatggcctcatcaacctgtccagatatccctgttcttgaaca 13030380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 228 - 325
Target Start/End: Complemental strand, 333644 - 333547
Alignment:
Q  228 gtcagtcactattctggtgaattaccaggtgttgagtcaaatctagaaagagcctctgaggtagcttctggtgaagttactttagaaagcccccaaca 325  Q
    ||||||||||| ||| ||||| | |||||||| | |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  333644 gtcagtcactactctagtgaacttccaggtgtggtgtcaaatctagaaaaagcctctgaggtagcttctgatgaagttactttagaaagcccccaaca 333547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 222 - 346
Target Start/End: Complemental strand, 21693583 - 21693459
Alignment:
Q  222 aatctggtcagtcactattctggtgaattaccaggtgttgagtcaaatctagaaagagcctct-gaggtagcttctggtgaagttactttagaaagcccc 320  Q
    ||||||||||||||||| |||||||||||||||||||||||| | |||||||||| ||| ||| ||| ||  |||||  ||| ||||| |||||||||||    
T  21693583 aatctggtcagtcactactctggtgaattaccaggtgttgagcccaatctagaaaaagcttctagagtta-tttctgaggaaattactgtagaaagcccc 21693485  T
Q  321 caacaacaagaaccaaacctacaaat 346  Q
    |||||||||| ||||||| |||||||    
T  21693484 caacaacaagcaccaaacttacaaat 21693459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 9 - 94
Target Start/End: Complemental strand, 21693761 - 21693676
Alignment:
Q  9 agcataggagaaatgtctgagatgagaagcaaagtctgtgaaagattgcctgctgatcaccctttccaaccaccaatgatcaaacc 94  Q
    |||||||||||||||||||||||||||| |||||| ||||||||| | |||||  |||| ||||| |||||||||||||| |||||    
T  21693761 agcataggagaaatgtctgagatgagaatcaaagtttgtgaaagactacctgcaaatcatccttttcaaccaccaatgataaaacc 21693676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 274 - 347
Target Start/End: Original strand, 22576103 - 22576176
Alignment:
Q  274 aaagagcctctgaggtagcttctggtgaagttactttagaaagcccccaacaacaagaaccaaacctacaaatg 347  Q
    ||||||||||||| |||||||||| ||||||| ||||||||| |||||||||||||| |||||||  |||||||    
T  22576103 aaagagcctctgaagtagcttctgatgaagttgctttagaaaacccccaacaacaagcaccaaactcacaaatg 22576176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 385 - 519
Target Start/End: Complemental strand, 13650659 - 13650525
Alignment:
Q  385 atattgagtctcaatcatctttagagaaagtcagtgaacctgattttatgatcacatcggaagattctgacgatgaggttgaattatctaactcatcctc 484  Q
    |||||||||||||  ||||| || ||||||||||||||||| |||||||||||  ||| || || ||||| | |||||||||   |||||||||||| |     
T  13650659 atattgagtctcatccatctataaagaaagtcagtgaacctaattttatgatcttatcagatgactctgatgttgaggttgagcaatctaactcatcttt 13650560  T
Q  485 tgtgatcataacttctgtttctgaacaaccttctg 519  Q
    |||| ||||||||| | || | || ||||||||||    
T  13650559 tgtggtcataacttatattcccgatcaaccttctg 13650525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 379 - 517
Target Start/End: Complemental strand, 21693396 - 21693258
Alignment:
Q  379 ctgaacatattgagtctcaatcatctttagagaaagtcagtgaacctgattttatgatcacatcggaagattctgacgatgaggttgaattatctaactc 478  Q
    |||| |||||||||||||  |||||||   | || ||||| |||||||||||||||||||||||  |||||||||| | |||||||||   |||||||||    
T  21693396 ctgatcatattgagtctccttcatcttctaaaaaggtcagcgaacctgattttatgatcacatctaaagattctgatgttgaggttgagcaatctaactc 21693297  T
Q  479 atcctctgtgatcataacttctgtttctgaacaaccttc 517  Q
    || || | || || |||| |||||| |||| ||||||||    
T  21693296 atactttatggtcttaacatctgttcctgatcaaccttc 21693258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 121
Target Start/End: Original strand, 13135900 - 13136000
Alignment:
Q  21 atgtctgagatgagaagcaaagtctgtgaaagattgcctgctgatcaccctttccaaccaccaatgatcaaacctttgagttatgttcctgctgatgtag 120  Q
    |||| ||||||||| | |||||||||||||||| | |||||  | || || || ||||||||||| ||  ||||| | || |||||||||||||||||||    
T  13135900 atgtttgagatgaggaacaaagtctgtgaaagactacctgcaaaccatccctttcaaccaccaataatagaacctcttaggtatgttcctgctgatgtag 13135999  T
Q  121 a 121  Q
    |    
T  13136000 a 13136000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 414 - 454
Target Start/End: Original strand, 22576227 - 22576267
Alignment:
Q  414 gtcagtgaacctgattttatgatcacatcggaagattctga 454  Q
    ||||||||| ||||||||||||||||||| |||| ||||||    
T  22576227 gtcagtgaatctgattttatgatcacatcagaagcttctga 22576267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 216 - 390
Target Start/End: Original strand, 58879 - 59053
Alignment:
Q  216 ttagaaaatctggtcagtcactattctggtgaattaccaggtgttgagtcaaatctagaaagagcctctgaggtagcttctggtgaagttactttagaaa 315  Q
    ||||| ||||||||||||||||| ||  |||||| ||||||||||||  | || ||| | | ||||| ||| ||||||||| ||||||||||||||||||    
T  58879 ttagagaatctggtcagtcactactcatgtgaatcaccaggtgttgaacctaacctacagaaagcctgtgaagtagcttctagtgaagttactttagaaa 58978  T
Q  316 gcccccaacaacaagaaccaaacctacaaatgacctcaacaaccctgccaaatatctctgttcctgaacatattg 390  Q
    ||||||||||||||| ||||||| |||||||| |||||||||||   ||| || |||||||||||||||| ||||    
T  58979 gcccccaacaacaagcaccaaacgtacaaatggcctcaacaacctgcccagatgtctctgttcctgaacaaattg 59053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 378 - 503
Target Start/End: Original strand, 59071 - 59196
Alignment:
Q  378 cctgaacatattgagtctcaatcatctttagagaaagtcagtgaacctgattttatgatcacatcggaagattctgacgatgaggttgaattatctaact 477  Q
    ||||| |||||||||||||  |||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||| | |||||||||   ||||||||    
T  59071 cctgatcatattgagtctctttcatctatagagaaagtcagtgaacctgattttacgatcacatcagaagattctgatgttgaggttgagcaatctaact 59170  T
Q  478 catcctctgtgatcataacttctgtt 503  Q
    |||| |||||| ||||| ||||||||    
T  59171 catcgtctgtggtcatatcttctgtt 59196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 4e-36; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 233 - 390
Target Start/End: Complemental strand, 36136026 - 36135869
Alignment:
Q  233 tcactattctggtgaattaccaggtgttgagtcaaatctagaaagagcctctgaggtagcttctggtgaagttactttagaaagcccccaacaacaagaa 332  Q
    ||||||||||||||||||||||||||||||||| ||   ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |   |    
T  36136026 tcactattctggtgaattaccaggtgttgagtccaactcagaaagagcctctaaggtagcttctggtgaagttactttagaaagcccccaacaatataca 36135927  T
Q  333 ccaaacctacaaatgacctcaacaaccctgccaaatatctctgttcctgaacatattg 390  Q
    ||||||  | ||||| ||||||| |||   ||| || |||||||||||||||| ||||    
T  36135926 ccaaacgcagaaatggcctcaactaccaacccagatgtctctgttcctgaacagattg 36135869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 142
Target Start/End: Complemental strand, 36136183 - 36136096
Alignment:
Q  55 tgcctgctgatcaccctttccaaccaccaatgatcaaacctttgagttatgttcctgctgatgtagatgtggttaatgaatcagtagt 142  Q
    ||||||||||||| ||||||||||||||||||||  ||||  | |  | | | |||||||||| ||| ||||||| ||||||||||||    
T  36136183 tgcctgctgatcatcctttccaaccaccaatgattcaacccctcaactttatacctgctgatgcagaggtggttactgaatcagtagt 36136096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 4e-33; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 231 - 359
Target Start/End: Complemental strand, 23236910 - 23236782
Alignment:
Q  231 agtcactattctggtgaattaccaggtgttgagtcaaatctagaaagagcctctgaggtagcttctggtgaagttactttagaaagcccccaacaacaag 330  Q
    |||||||||||| ||||| |||||||||||||| |||||||| | | ||||||||| |||||||||| ||||||||| ||||||||||||||||| ||||    
T  23236910 agtcactattctcgtgaactaccaggtgttgagccaaatctacagaaagcctctgaagtagcttctgatgaagttaccttagaaagcccccaacatcaag 23236811  T
Q  331 aaccaaacctacaaatgacctcaacaacc 359  Q
     || |||| |||||||| |||||||||||    
T  23236810 cacgaaacttacaaatggcctcaacaacc 23236782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 216 - 338
Target Start/End: Complemental strand, 21367324 - 21367204
Alignment:
Q  216 ttagaaaatctggtcagtcactattctggtgaattaccaggtgttgagtcaaatctagaaagagcctctgaggtagcttctggtgaagttactttagaaa 315  Q
    ||||| |||||||| |||||||| || |||||| ||||||| |||||| | ||| |||||||  ||||||| ||||||||| |||||||| |||||||||    
T  21367324 ttagagaatctggttagtcactactcaggtgaactaccaggcgttgagcccaatttagaaag--cctctgaagtagcttctagtgaagttgctttagaaa 21367227  T
Q  316 gcccccaacaacaagaaccaaac 338  Q
    ||||| ||||||||| |||||||    
T  21367226 gccccgaacaacaagcaccaaac 21367204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 209 - 359
Target Start/End: Original strand, 24848764 - 24848914
Alignment:
Q  209 atcaattttagaaaatctggtcagtcactattctggtgaattaccaggtgttgagtcaaatctagaaagagcctct-gaggtagcttctggtgaagttac 307  Q
    |||| |||| || |||||||||| |||||| || || ||||||||||||||||| || || ||||||| ||||||| ||| ||  | ||| |||| ||||    
T  24848764 atcagttttggagaatctggtcaatcactactcaggcgaattaccaggtgttgaatccaacctagaaaaagcctctagagttat-tcctgatgaaattac 24848862  T
Q  308 tttagaaagcccccaacaacaagaaccaaacctacaaatgacctcaacaacc 359  Q
    |||| |||||||||||||||||  ||||||| ||||||||||||||||||||    
T  24848863 tttaaaaagcccccaacaacaaacaccaaacttacaaatgacctcaacaacc 24848914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 244 - 354
Target Start/End: Complemental strand, 24379077 - 24378967
Alignment:
Q  244 gtgaattaccaggtgttgagtcaaatctagaaagagcctctgaggtagcttctggtgaagttactttagaaagcccccaacaacaagaaccaaacctaca 343  Q
    ||||||||||||||  ||||  ||||||||| | || |||| | ||||||||| ||||||||||||||||||||||||||||||||| ||| ||| ||||    
T  24379077 gtgaattaccaggttgtgagctaaatctagagaaagtctctaaagtagcttctagtgaagttactttagaaagcccccaacaacaagcacctaacgtaca 24378978  T
Q  344 aatgacctcaa 354  Q
    |||| ||||||    
T  24378977 aatggcctcaa 24378967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 280 - 347
Target Start/End: Complemental strand, 18939889 - 18939822
Alignment:
Q  280 cctctgaggtagcttctggtgaagttactttagaaagcccccaacaacaagaaccaaacctacaaatg 347  Q
    ||||||| |||||||| | ||||||| |||||||||||||||||||||||  |||||||  |||||||    
T  18939889 cctctgaagtagcttcagatgaagttgctttagaaagcccccaacaacaaacaccaaacacacaaatg 18939822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 24379312 - 24379239
Alignment:
Q  9 agcataggagaaatgtctgagatgagaagcaaagtctgtgaaagattgcctgctgatcaccctttccaaccacc 82  Q
    |||||||| ||||||||||||||||||| |||||| ||||| ||| | |||||| | || ||||| ||||||||    
T  24379312 agcataggtgaaatgtctgagatgagaaacaaagtttgtgagagactacctgctaaccatccttttcaaccacc 24379239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 414 - 466
Target Start/End: Complemental strand, 18939722 - 18939670
Alignment:
Q  414 gtcagtgaacctgattttatgatcacatcggaagattctgacgatgaggttga 466  Q
    |||||||||||||| |||||||||||||| |||| |||||| | |||||||||    
T  18939722 gtcagtgaacctgactttatgatcacatcagaagcttctgatgttgaggttga 18939670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 117
Target Start/End: Complemental strand, 21367510 - 21367426
Alignment:
Q  33 agaagcaaagtctgtgaaagattgcctgctgatcaccctttccaaccaccaatgatcaaacctttgagttatgttcctgctgatg 117  Q
    |||| |||||||||||||||| | |||||| |||| | ||  ||||||||||||||  ||||| | || | ||||||||||||||    
T  21367510 agaaacaaagtctgtgaaagactacctgctaatcatcattatcaaccaccaatgatagaacctcttaggtttgttcctgctgatg 21367426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 12 - 144
Target Start/End: Complemental strand, 9507 - 9375
Alignment:
Q  12 ataggagaaatgtctgagatgagaagcaaagtctgtgaaagattgcctgctgatcaccctttccaaccaccaatgatcaaacctttgagttatgttcctg 111  Q
    ||||| || |||| ||||||||||| | |||||| ||||||| ||||| |||||||||||||||||||||| |||||||||||||| |||| ||||||||    
T  9507 ataggtgagatgtgtgagatgagaaaccaagtctttgaaagactgcctactgatcaccctttccaaccaccgatgatcaaacctttaagttttgttcctg 9408  T
Q  112 ctgatgtagatgtggttaatgaatcagtagtgc 144  Q
    |||||| ||| ||||||| |||| ||| |||||    
T  9407 ctgatgcagaagtggttagtgaaccagcagtgc 9375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0435 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: scaffold0435
Description:

Target: scaffold0435; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 231 - 385
Target Start/End: Original strand, 1135 - 1289
Alignment:
Q  231 agtcactattctggtgaattaccaggtgttgagtcaaatctagaaagagcctctgaggtagcttctggtgaagttactttagaaagcccccaacaacaag 330  Q
    |||||||| || |||||| ||||| |||||||| |  ||||||||| ||||||||| |||||||||| ||||| |||||||||||||||| |||||||||    
T  1135 agtcactactcaggtgaactaccaagtgttgagccctatctagaaatagcctctgaagtagcttctgatgaagatactttagaaagccccgaacaacaag 1234  T
Q  331 aaccaaacctacaaatgacctcaacaaccctgccaaatatctctgttcctgaaca 385  Q
     ||||||| |||| ||| ||||| ||| |   ||||||||| |||||||||||||    
T  1235 caccaaacttacagatggcctcatcaaactacccaaatatccctgttcctgaaca 1289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0435; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 121
Target Start/End: Original strand, 910 - 1022
Alignment:
Q  9 agcataggagaaatgtctgagatgagaagcaaagtctgtgaaagattgcctgctgatcaccctttccaaccaccaatgatcaaacctttgagttatgttc 108  Q
    |||||||| || |||| ||||||||| | |||| ||||||||||| | |||||  | || ||||| ||||||||||| ||  ||||| | || | |||||    
T  910 agcataggtgagatgtttgagatgaggaacaaattctgtgaaagactacctgcaaaccatccttttcaaccaccaataatagaacctcttaggtttgttc 1009  T
Q  109 ctgctgatgtaga 121  Q
    || ||||||||||    
T  1010 ctactgatgtaga 1022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 66; Significance: 6e-29; HSPs: 2)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 184 - 329
Target Start/End: Complemental strand, 40385 - 40240
Alignment:
Q  184 cttcatccaaccaaacattagaaatatcaattttagaaaatctggtcagtcactattctggtgaattaccaggtgttgagtcaaatctagaaagagcctc 283  Q
    ||||| |||||||||| | ||||| | || | ||||| |||||||  |||||||| || |||||| |||||||||||||| |  |||||| || ||||||    
T  40385 cttcaaccaaccaaacttcagaaacaccagtgttagagaatctggctagtcactactcaggtgaactaccaggtgttgagccctatctagcaaaagcctc 40286  T
Q  284 tgaggtagcttctggtgaagttactttagaaagcccccaacaacaa 329  Q
    ||| |||||||||||||||||||||||||||||| |||||||||||    
T  40285 tgaagtagcttctggtgaagttactttagaaagctcccaacaacaa 40240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 8 - 121
Target Start/End: Complemental strand, 40564 - 40451
Alignment:
Q  8 aagcataggagaaatgtctgagatgagaagcaaagtctgtgaaagattgcctgctgatcaccctttccaaccaccaatgatcaaacctttgagttatgtt 107  Q
    ||||||||| ||||||||||||| ||||| |||||||||||||||| |  ||||| | || ||||| ||||||||||| ||  ||||| | || | ||||    
T  40564 aagcataggtgaaatgtctgagaggagaaacaaagtctgtgaaagactaactgctaaccatccttttcaaccaccaataatagaacctcttaggtttgtt 40465  T
Q  108 cctgctgatgtaga 121  Q
    |||| ||||| |||    
T  40464 cctgatgatgcaga 40451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0789 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0789
Description:

Target: scaffold0789; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 243 - 359
Target Start/End: Complemental strand, 5399 - 5283
Alignment:
Q  243 ggtgaattaccaggtgttgagtcaaatctagaaagagcctctgaggtagcttctggtgaagttactttagaaagcccccaacaacaagaaccaaacctac 342  Q
    |||||||||| | || ||||| | |||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||| | ||||||| |||    
T  5399 ggtgaattactatgttttgagcccaatctagaaagagcctctgaagtagcttctgatgcagttactttagaaagcccccaacaacatgcaccaaacttac 5300  T
Q  343 aaatgacctcaacaacc 359  Q
    ||||| |||||| ||||    
T  5299 aaatggcctcaataacc 5283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0080 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 184 - 359
Target Start/End: Complemental strand, 22916 - 22741
Alignment:
Q  184 cttcatccaaccaaacattagaaatatcaattttagaaaatctggtcagtcactattctggtgaattaccaggtgttgagtcaaatctagaaagagcctc 283  Q
    ||||| ||||||||||  ||||||  ||| | ||||| ||| |||  ||||| || || |||||| ||||||||||| || || ||||||||||||||||    
T  22916 cttcaaccaaccaaaccctagaaacctcagtgttagagaatatggctagtcattactcaggtgaactaccaggtgttcagccatatctagaaagagcctc 22817  T
Q  284 tgaggtagcttctggtgaagttactttagaaagcccccaacaacaagaaccaaacctacaaatgacctcaacaacc 359  Q
    ||| |||||||||| |||||||||||||||||||||||| ||||||| | |||||  || |||| ||||| |||||    
T  22816 tgaagtagcttctgatgaagttactttagaaagcccccatcaacaagcatcaaacgcacgaatggcctcatcaacc 22741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0324 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: scaffold0324
Description:

Target: scaffold0324; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 243 - 351
Target Start/End: Complemental strand, 1646 - 1538
Alignment:
Q  243 ggtgaattaccaggtgttgagtcaaatctagaaagagcctctgaggtagcttctggtgaagttactttagaaagcccccaacaacaagaaccaaacctac 342  Q
    ||||||||||||||| | ||| ||||  ||||||||||||||||  ||||||||| |||||||| ||||||||||||||||||||| ||||| ||| |||    
T  1646 ggtgaattaccaggtttagagccaaacttagaaagagcctctgaaatagcttctgatgaagttattttagaaagcccccaacaacatgaacccaacttac 1547  T
Q  343 aaatgacct 351  Q
    |||||||||    
T  1546 aaatgacct 1538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0261 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 233 - 359
Target Start/End: Original strand, 2903 - 3029
Alignment:
Q  233 tcactattctggtgaattaccaggtgttgagtcaaatctagaaagagcctctgaggtagcttctggtgaagttactttagaaagcccccaacaacaagaa 332  Q
    |||||| || |||||||||||||||  ||||  ||||||||| | ||||||| | | ||||||| ||||||||||||| ||||||||||||| ||||| |    
T  2903 tcactactcaggtgaattaccaggttgtgagctaaatctagagaaagcctctaaagcagcttctagtgaagttactttggaaagcccccaactacaagca 3002  T
Q  333 ccaaacctacaaatgacctcaacaacc 359  Q
    || ||| |||||||| |||||| ||||    
T  3003 cctaacgtacaaatggcctcaataacc 3029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1354 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: scaffold1354
Description:

Target: scaffold1354; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 243 - 347
Target Start/End: Complemental strand, 1398 - 1294
Alignment:
Q  243 ggtgaattaccaggtgttgagtcaaatctagaaagagcctctgaggtagcttctggtgaagttactttagaaagcccccaacaacaagaaccaaacctac 342  Q
    ||||||||||||||| ||||| ||||   |||||||||||||||  |||||| || |||||||| ||||||||||||||||||||| ||||| |||  ||    
T  1398 ggtgaattaccaggttttgagccaaactcagaaagagcctctgaaatagcttttgatgaagttattttagaaagcccccaacaacatgaacctaactcac 1299  T
Q  343 aaatg 347  Q
    |||||    
T  1298 aaatg 1294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1354; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 1592 - 1552
Alignment:
Q  49 aaagattgcctgctgatcaccctttccaaccaccaatgatc 89  Q
    ||||||| |||| |||||||||||| |||||||||||||||    
T  1592 aaagattacctgttgatcaccctttgcaaccaccaatgatc 1552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0175 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: scaffold0175
Description:

Target: scaffold0175; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 204 - 347
Target Start/End: Original strand, 9503 - 9646
Alignment:
Q  204 gaaatatcaattttagaaaatctggtcagtcactattctggtgaattaccaggtgttgagtcaaatctagaaagagcctctgaggtagcttctggtgaag 303  Q
    |||| ||| |||||||| | |||| ||||||| | |||||||||| | |||| | ||||| |||||||  | | ||||||| | |||| ||||| |||||    
T  9503 gaaacatctattttagagactctgatcagtcagtgttctggtgaacttccagatattgagccaaatctgtagaaagcctctaaagtagtttctgatgaag 9602  T
Q  304 ttactttagaaagcccccaacaacaagaaccaaacctacaaatg 347  Q
    |||||||||||| |||||||||| ||| |||||||  |||||||    
T  9603 ttactttagaaatcccccaacaataagcaccaaactcacaaatg 9646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0175; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 9357 - 9423
Alignment:
Q  21 atgtctgagatgagaagcaaagtctgtgaaagattgcctgctgatcaccctttccaaccaccaatgat 88  Q
    |||||||||||||||| |||||||||||||||||| ||  || | || ||||||||||||||| ||||    
T  9357 atgtctgagatgagaatcaaagtctgtgaaagattacc-cctaaccatcctttccaaccaccattgat 9423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 299 - 383
Target Start/End: Complemental strand, 18379958 - 18379874
Alignment:
Q  299 tgaagttactttagaaagcccccaacaacaagaaccaaacctacaaatgacctcaacaaccctgccaaatatctctgttcctgaa 383  Q
    |||||||||||||||||||||||||||||||| |||||||  ||||||  ||||| |||||   ||| ||||| |||||||||||    
T  18379958 tgaagttactttagaaagcccccaacaacaagcaccaaacacacaaattgcctcatcaacctacccagatatccctgttcctgaa 18379874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 278 - 329
Target Start/End: Complemental strand, 22804167 - 22804116
Alignment:
Q  278 agcctctgaggtagcttctggtgaagttactttagaaagcccccaacaacaa 329  Q
    |||||||||||||||||| |  ||||||||||||||||||||||||||||||    
T  22804167 agcctctgaggtagcttcagaagaagttactttagaaagcccccaacaacaa 22804116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 13617980 - 13617939
Alignment:
Q  12 ataggagaaatgtctgagatgagaagcaaagtctgtgaaaga 53  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  13617980 ataggagaaatgtctgagatgagaaacaaagtctgtgaaaga 13617939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 414 - 466
Target Start/End: Complemental strand, 21626992 - 21626940
Alignment:
Q  414 gtcagtgaacctgattttatgatcacatcggaagattctgacgatgaggttga 466  Q
    |||||||||||||| |||||||||||||| |||| |||||| | |||||||||    
T  21626992 gtcagtgaacctgactttatgatcacatcagaagcttctgatgttgaggttga 21626940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 354
Target Start/End: Complemental strand, 21627161 - 21627085
Alignment:
Q  278 agcctctgaggtagcttctggtgaagttactttagaaagcccccaacaacaagaaccaaacctacaaatgacctcaa 354  Q
    ||||||| | |||||||| | ||||||| ||||||||||||| |||||||||  |||||||  ||||||| ||||||    
T  21627161 agcctctaaagtagcttcagatgaagttgctttagaaagcccacaacaacaaacaccaaacacacaaatggcctcaa 21627085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0183 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0183
Description:

Target: scaffold0183; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 245 - 354
Target Start/End: Complemental strand, 1087 - 978
Alignment:
Q  245 tgaattaccaggtgttgagtcaaatctagaaagagcctctgaggtagcttctggtgaagttactttagaaagcccccaacaacaagaaccaaacctacaa 344  Q
    |||||||| |||| ||||| | || ||  |||||||||||||  ||||||||  ||||||||||| ||||||||||||||||||   ||| ||| |||||    
T  1087 tgaattactaggttttgagcctaacctttaaagagcctctgaaatagcttctaatgaagttacttcagaaagcccccaacaacatacacctaacttacaa 988  T
Q  345 atgacctcaa 354  Q
    ||| ||||||    
T  987 atggcctcaa 978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0120 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0120
Description:

Target: scaffold0120; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 226 - 359
Target Start/End: Original strand, 34965 - 35098
Alignment:
Q  226 tggtcagtcactattctggtgaattaccaggtgttgagtcaaatctagaaagagcctctgaggtagcttctggtgaagttactttagaaagcccccaaca 325  Q
    |||||||||||| |||||||| | |   ||||||||||   |||||| | | | ||| ||| ||||||| || |||| || |||||||||||||||||||    
T  34965 tggtcagtcactgttctggtgtactggtaggtgttgagcagaatctacagaaatcctatgaagtagcttttgatgaatttgctttagaaagcccccaaca 35064  T
Q  326 acaagaaccaaacctacaaatgacctcaacaacc 359  Q
     |||| | ||||| |||||||| |||||||||||    
T  35065 tcaagcagcaaacttacaaatggcctcaacaacc 35098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0120; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 226 - 359
Target Start/End: Complemental strand, 44040 - 43907
Alignment:
Q  226 tggtcagtcactattctggtgaattaccaggtgttgagtcaaatctagaaagagcctctgaggtagcttctggtgaagttactttagaaagcccccaaca 325  Q
    |||||||||||| |||||||| | |   ||||||||||   |||||| | | | ||| ||| ||||||| || |||| || |||||||||||||||||||    
T  44040 tggtcagtcactgttctggtgtactggtaggtgttgagcagaatctacagaaatcctatgaagtagcttttgatgaatttgctttagaaagcccccaaca 43941  T
Q  326 acaagaaccaaacctacaaatgacctcaacaacc 359  Q
     |||| | ||||| |||||||| |||||||||||    
T  43940 tcaagcagcaaacttacaaatggcctcaacaacc 43907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 278 - 338
Target Start/End: Complemental strand, 145151 - 145091
Alignment:
Q  278 agcctctgaggtagcttctggtgaagttactttagaaagcccccaacaacaagaaccaaac 338  Q
    |||||||||||||||||| |  |||||||||||||||| |||||||||||||  |||||||    
T  145151 agcctctgaggtagcttcagaagaagttactttagaaaacccccaacaacaatcaccaaac 145091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 414 - 466
Target Start/End: Complemental strand, 144979 - 144927
Alignment:
Q  414 gtcagtgaacctgattttatgatcacatcggaagattctgacgatgaggttga 466  Q
    ||||||||| |||| |||||||||||||| |||| |||||| | |||||||||    
T  144979 gtcagtgaatctgactttatgatcacatcagaagcttctgatgttgaggttga 144927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 216 - 338
Target Start/End: Original strand, 1896 - 2018
Alignment:
Q  216 ttagaaaatctggtcagtcactattctggtgaattaccaggtgttgagtcaaatctagaaagagcctct-gaggtagcttctggtgaagttactttagaa 314  Q
    |||||||||||||  |||||||| || |||||| ||||| |||||||| |  | ||| ||| ||||||| ||| ||  ||||| |||| |||||||||||    
T  1896 ttagaaaatctggctagtcactactcaggtgaactaccaagtgttgagccctacctaaaaaaagcctctagagttat-ttctgatgaaattactttagaa 1994  T
Q  315 agcccccaacaacaagaaccaaac 338  Q
    ||||| |||||||||| |||||||    
T  1995 agccctcaacaacaagcaccaaac 2018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0315 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0315
Description:

Target: scaffold0315; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 301 - 357
Target Start/End: Complemental strand, 20006 - 19950
Alignment:
Q  301 aagttactttagaaagcccccaacaacaagaaccaaacctacaaatgacctcaacaa 357  Q
    ||||| |||||||||||||||||| | ||| ||||||| |||||||| |||||||||    
T  20006 aagttgctttagaaagcccccaactataagcaccaaacttacaaatggcctcaacaa 19950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0315; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 414 - 454
Target Start/End: Complemental strand, 19851 - 19811
Alignment:
Q  414 gtcagtgaacctgattttatgatcacatcggaagattctga 454  Q
    |||||||||||||| |||||||||||||| |||| ||||||    
T  19851 gtcagtgaacctgactttatgatcacatcagaagcttctga 19811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University