View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20469_low_1 (Length: 774)
Name: NF20469_low_1
Description: NF20469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20469_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 416; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 14 - 433
Target Start/End: Complemental strand, 48231378 - 48230959
Alignment:
| Q |
14 |
cacagactcagacaccgattcattgcaggtaagcaagagcgcagatgcagacaccgcaggaggctcaaaggctggatcactttatacgaatgaacaaagt |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48231378 |
cacagactcagacaccgattcattgcaggtaagcaagagcgcagatgcagacaccgcaggaggctcaaaggctggatcactttatacgaatgaacaaagt |
48231279 |
T |
|
| Q |
114 |
gatggcttagaatatgcaattgacaaatatagaaaacttgggctcaaaattggtcctgaaatgtggaaacgtattaggtcggatcgagattattccactt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48231278 |
gatggcttagaatatgcaattgacaaatatagaaaacttgggctcaaaattggtcctgaaatgtggaaacgtattaggtcggatcgagattattccactt |
48231179 |
T |
|
| Q |
214 |
tactaaaaggtcggactgacagttcttttcgaaacagacataggtctaacatagagaaagggagaattcctcctattaagaaggaaaatgaaatttttga |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48231178 |
tactaaaaggtcggactgacagttcttttcgaaacagacataggtctaacatagagaaagggagaattcctcctattaagaaggaaaatgaaatttttga |
48231079 |
T |
|
| Q |
314 |
gaagcatgggttggacattgctgcacacagaaagatgatccaagagaaggataagaggaatgaggaaaaggtggagaaggaaaatgaaaattgtgagaag |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48231078 |
gaagcatgggttggacattgctgcacacagaaagatgatccaagagaaggataagaggaatgaggaaaaggtggagaaggaaaatgaaaattgtgagaag |
48230979 |
T |
|
| Q |
414 |
tatgggttggacattgctgc |
433 |
Q |
| |
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||||||||||||||||||| |
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| T |
48230978 |
catgggttggacattgctgc |
48230959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 14 - 433
Target Start/End: Complemental strand, 48236418 - 48235999
Alignment:
| Q |
14 |
cacagactcagacaccgattcattgcaggtaagcaagagcgcagatgcagacaccgcaggaggctcaaaggctggatcactttatacgaatgaacaaagt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48236418 |
cacagactcagacaccgattcattgcaggtaagcaagagcgcagatgcagacaccgcaggaggctcaaaggctggatcactttatacgaatgaacaaagt |
48236319 |
T |
|
| Q |
114 |
gatggcttagaatatgcaattgacaaatatagaaaacttgggctcaaaattggtcctgaaatgtggaaacgtattaggtcggatcgagattattccactt |
213 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48236318 |
gatggcttagaatatgcaattgacaaatatagaaaacttgggctcaaaattggtcctgaaatgtggaaacgtattaggtcggatcgagattattccactt |
48236219 |
T |
|
| Q |
214 |
tactaaaaggtcggactgacagttcttttcgaaacagacataggtctaacatagagaaagggagaattcctcctattaagaaggaaaatgaaatttttga |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48236218 |
tactaaaaggtcggactgacagttcttttcgaaacagacataggtctaacatagagaaagggagaattcctcctattaagaaggaaaatgaaatttttga |
48236119 |
T |
|
| Q |
314 |
gaagcatgggttggacattgctgcacacagaaagatgatccaagagaaggataagaggaatgaggaaaaggtggagaaggaaaatgaaaattgtgagaag |
413 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48236118 |
gaagcatgggttggacattgctgcacacagaaagatgatccaagagaaggataagaggaatgaggaaaaggtggagaaggaaaatgaaaattgtgagaag |
48236019 |
T |
|
| Q |
414 |
tatgggttggacattgctgc |
433 |
Q |
| |
|
||||||||||||||||||| |
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| T |
48236018 |
catgggttggacattgctgc |
48235999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 292 - 758
Target Start/End: Complemental strand, 48231004 - 48230531
Alignment:
| Q |
292 |
agaaggaaaatgaaatttttgagaagcatgggttggacattgctgcacacagaaagatgatccaagagaaggataagaggaatgaggaaaaggtggagaa |
391 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||||||||||| |||||||||| | ||||||| || |||||||||||||||||||||||||||| |
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| T |
48231004 |
agaaggaaaatgaaaattgtgagaagcatgggttggacattgctgcatacagaaagataaaccaagaggagaataagaggaatgaggaaaaggtggagaa |
48230905 |
T |
|
| Q |
392 |
ggaaaatgaaaattgtgagaagtatgggttggacattgctgctattagaaaggtgatccaagaggaaaataagatcaatcaatcagttattgccaatgag |
491 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
48230904 |
ggaaaatgaaaattctgagaagtatgggttggacattgctgctattagaaaggtgatccaagaggaaaataagatcaatcaatcagttattgccaaggag |
48230805 |
T |
|
| Q |
492 |
gtcacaagttctgttattaacaaactcgctcctgagtttgaagagacgattcataaggctgtaaacaagacacttggaagccttttcactagtctgtcca |
591 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48230804 |
gtcacaaattctgttattaacaaactcgctcctgagtttgatgggacgattcataaggctgtaaacaagacacttggaagccttttcactagtctgtcca |
48230705 |
T |
|
| Q |
592 |
aggtttattctgagaagtgatgatgtggtgcttaatgttcttgcttcatgaaacttttttgctgtaacattaccacttgaagatgtggtaaggtttacca |
691 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48230704 |
aggtttattctgagaagtgatgatgtggtgcttaatgttcttgcttcatgaaacttttttgctgtaacattaccacttgaagatgtggtaaggtttacca |
48230605 |
T |
|
| Q |
692 |
tgctatgtgaatcttgtctttgcttgtaag-------taatactcttctaaatccattttcaatacttagtttt |
758 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
48230604 |
tgctatgtgaatcttgtctttgcttgtaagttgtaactaatactcttctaaatccattttcaatacttagtttt |
48230531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 292 - 758
Target Start/End: Complemental strand, 48236044 - 48235571
Alignment:
| Q |
292 |
agaaggaaaatgaaatttttgagaagcatgggttggacattgctgcacacagaaagatgatccaagagaaggataagaggaatgaggaaaaggtggagaa |
391 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||||||||||| |||||||||| | ||||||| || |||||||||||||||||||||||||||| |
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| T |
48236044 |
agaaggaaaatgaaaattgtgagaagcatgggttggacattgctgcatacagaaagataaaccaagaggagaataagaggaatgaggaaaaggtggagaa |
48235945 |
T |
|
| Q |
392 |
ggaaaatgaaaattgtgagaagtatgggttggacattgctgctattagaaaggtgatccaagaggaaaataagatcaatcaatcagttattgccaatgag |
491 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
48235944 |
ggaaaatgaaaattctgagaagtatgggttggacattgctgctattagaaaggtgatccaagaggaaaataagatcaatcaatcagttattgccaaggag |
48235845 |
T |
|
| Q |
492 |
gtcacaagttctgttattaacaaactcgctcctgagtttgaagagacgattcataaggctgtaaacaagacacttggaagccttttcactagtctgtcca |
591 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48235844 |
gtcacaaattctgttattaacaaactcgctcctgagtttgatgggacgattcataaggctgtaaacaagacacttggaagccttttcactagtctgtcca |
48235745 |
T |
|
| Q |
592 |
aggtttattctgagaagtgatgatgtggtgcttaatgttcttgcttcatgaaacttttttgctgtaacattaccacttgaagatgtggtaaggtttacca |
691 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48235744 |
aggtttattctgagaagtgatgatgtggtgcttaatgttcttgcttcatgaaacttttttgctgtaacattaccacttgaagatgtggtaaggtttacca |
48235645 |
T |
|
| Q |
692 |
tgctatgtgaatcttgtctttgcttgtaag-------taatactcttctaaatccattttcaatacttagtttt |
758 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48235644 |
tgctatgtgaatcttgtctttgcttgtaagttgtaactaatactcttctaaatccattttcaatacttagtttt |
48235571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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