View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20469_low_14 (Length: 456)
Name: NF20469_low_14
Description: NF20469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20469_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 163; Significance: 7e-87; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 19 - 248
Target Start/End: Complemental strand, 6206557 - 6206319
Alignment:
| Q |
19 |
gaggatatgtgattggttacaaagggctcacactagtcactgtaagaggagctggacacatggttccaagtgaccaaccataccgagcactaaccatgat |
118 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
6206557 |
gagggtatgtgattggttacaaagggctcacactagtcactgtaagaggagctggacacatggttccaactgaccaaccataccgagcactaaccatgat |
6206458 |
T |
|
| Q |
119 |
ctcatctttccttcttggacaacttcctcctcaattnnnnnnntcttaagtctattcagtgtatcaataaaatttatgtgaaaaatt------------t |
206 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
6206457 |
ctcatctttccttcttggacaacttcctcctcaatt---aaaatcttaagtctattcagtgtatcaataaaatttatgtgaaaaatttgacgagtttcat |
6206361 |
T |
|
| Q |
207 |
acaataattcatcaaaatatgtgtgctccatttctaaattat |
248 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||| |
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| T |
6206360 |
acaataattcatcaaaatatgtgtgctctatttctaaattat |
6206319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 6214307 - 6214087
Alignment:
| Q |
19 |
gaggatatgtgattggttacaaagggctcacactagtcactgtaagaggagctggacacatggttccaagtgaccaaccataccgagcactaaccatgat |
118 |
Q |
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|||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
6214307 |
gagggtatgtgattggttacaaagggctcacactaatcactgtaagaggagctgggcacatggttccaactgaccaaccataccgagcactaaccgtgat |
6214208 |
T |
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| Q |
119 |
ctcatctttccttcttggacaacttcctcctcaattnnnnnnntcttaagtctattcagtgtatcaataaaatttatgtgaaaaatttacaataattcat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
6214207 |
ctcatctttccttcttggacaacttcctcctcaattaaaatcttaattagtctattcagtgtatcaataaaatgtatgtgaacaatttacaataattcat |
6214108 |
T |
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| Q |
219 |
caaaatatgtgtgctccattt |
239 |
Q |
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|||||||||||||||| |||| |
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| T |
6214107 |
caaaatatgtgtgctctattt |
6214087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 19 - 154
Target Start/End: Complemental strand, 6176744 - 6176609
Alignment:
| Q |
19 |
gaggatatgtgattggttacaaagggctcacactagtcactgtaagaggagctggacacatggttccaagtgaccaaccataccgagcactaaccatgat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6176744 |
gaggatatgtgattggttacaaagggctcgcacttgttactgttagaggagctggacacatggttccaagtgaccaaccataccgagcactaaccatgat |
6176645 |
T |
|
| Q |
119 |
ctcatctttccttcttggacaacttcctcctcaatt |
154 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
6176644 |
ctcatctttccttcttggacaacttcctcctcaatt |
6176609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 284 - 446
Target Start/End: Complemental strand, 6214032 - 6213862
Alignment:
| Q |
284 |
tcaagtttagtcattaggattgatgtgtattggaaaacgatgacctctacgccatgtatacgagatccaaattggttgaatatctatcnnnnnnnaaaat |
383 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
6214032 |
tcaagtttagtcattaggattgatgtgtattggaatacgatgacctgtatgccatgtatacgagatccaaattggttgaatatctatcttttttaaaaat |
6213933 |
T |
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| Q |
384 |
ttcataaaacatgat--------aatatcatcaaactagaaagaaacaaaaattaaacccataaacacatc |
446 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6213932 |
ttcataaaacatgatcccaataaaatatcatcaaactagaaagaaacaaaaattaaacccataaacacatc |
6213862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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