View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20469_low_16 (Length: 449)
Name: NF20469_low_16
Description: NF20469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20469_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 64 - 433
Target Start/End: Original strand, 37251476 - 37251854
Alignment:
| Q |
64 |
tgaaatgtatttaaggctaaccatctcctctcactatcaccgtaataaaaagga---------ataaaggtcagatacccatcataagagtttataaaag |
154 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
37251476 |
tgaaatatatttaaggctaaccatctcctctcactatcaccgtaataaaaaggagtaaaggtcataaaggtcagatacccatcataagagtttataaaag |
37251575 |
T |
|
| Q |
155 |
attgcaaacataacactttaattcacatctcacatttagcaccatgcatcaacttgaagtattcatcatcttcctcccattcctcctcggtttaacctta |
254 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
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| T |
37251576 |
attgcaaacataacactttaattcacatctcacatttagcaccatgcatcaacttgaagtactcatcatcttcctcccattcctcctcggtttaacccta |
37251675 |
T |
|
| Q |
255 |
acattcaactgcttcatcacactcattacatggatcttcaactcatgtctccgatccgacacacacctcatcaaaacctatggttcatgggctttaatca |
354 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37251676 |
acattcaactgcttcgtcacactcattacatggatcttcaactcatgtctccgatccgacacacacctcatcaaaacctatggttcatgggctttaatca |
37251775 |
T |
|
| Q |
355 |
ccggagcaactgacggcatcggaaaagccctagcctaccaactagcacagaaaagtctcaacctcattcttgtaagtag |
433 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37251776 |
ccggagcaactgacggcatcggaaaagccctagcctaccaactagcacagaaaagtctcaacctcattcttgtaagtag |
37251854 |
T |
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