View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20469_low_18 (Length: 410)
Name: NF20469_low_18
Description: NF20469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20469_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 18 - 400
Target Start/End: Original strand, 24146920 - 24147301
Alignment:
| Q |
18 |
tatttgtgatcaaacgatgtaaaatatcggtaaatcgatcccttaagaggcggaagcatggggtctaaagcaagctctactgtgttcttatgaatttagg |
117 |
Q |
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| T |
24146920 |
tatttgtgctcaaacgatgtgaaatatcggtaaatcgatcccccaagaggcggaagcatggggtctaaagcaagctctactgtgttcttatgaatttagg |
24147019 |
T |
|
| Q |
118 |
cttctgcaaagtgtttattgaactagattccaaactactcgtggacggcatggcggggagaccaagtcatacaacagagtggggtagtattttatgtgct |
217 |
Q |
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| T |
24147020 |
cttctgcaaagtgtttattgaactagattccaaactactcgtggacggcatggcggg-agaccaagtcatacaacaaagtggggtagtattttatgtgct |
24147118 |
T |
|
| Q |
218 |
tgcaaaacatttttatattctttaccaaactttcagataagttttcttcggagacaaacaaacaatgttgctcaccttctagctagtggcgttgtcttgt |
317 |
Q |
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|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24147119 |
tgcaaaacatttttatattctttaccaaacttacggataagttttcttcggagacaaacaaacaatgttgctcaccttctagctagtggcgttgtcttgt |
24147218 |
T |
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| Q |
318 |
gctagttgccaagtctctgattatatacctccatgtattactacttctttggttaatgaaatgagttaagtttgttgttggaa |
400 |
Q |
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| T |
24147219 |
gctagttgccaagtctctgattatatacctccatgtattactactactttgattaatgaaatgagttaagtttgttgctggaa |
24147301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 67 - 394
Target Start/End: Original strand, 24152411 - 24152734
Alignment:
| Q |
67 |
gcggaagcatggggtctaaagcaagctctactgtgttcttatgaatttaggcttctgcaaagtgtttattgaactagattccaaactactcgtggacggc |
166 |
Q |
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| T |
24152411 |
gcggaagcatagggtctaaagcaagctct---gtgttcttatgaatttaggcttctgcaaagtgtttattgaactagattccaaactactcgtggacggc |
24152507 |
T |
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| Q |
167 |
atggcggggagaccaagtcatacaacagagtggggtagtattttatgtgcttgcaaaacatttttatattctttaccaaactttcagataagttttcttc |
266 |
Q |
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| T |
24152508 |
atggcggg-agaccaagtcatacaacatagtggggtagtattttatgtgcttgcaaaacatttttatattctttaccaaactttcggataagttttcttc |
24152606 |
T |
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| Q |
267 |
ggagacaaacaaacaatgttgctcaccttctagctagtggcgttgtcttgtgctagttgccaagtctctgattatatacctccatgtattactacttctt |
366 |
Q |
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||||||||||||||||| ||| |||||||||||||||| || ||||||| ||||||||||||||||| ||||||||| |||||||||||||||||| ||| |
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| T |
24152607 |
ggagacaaacaaacaatattgttcaccttctagctagtcgcattgtcttatgctagttgccaagtctttgattatattcctccatgtattactactactt |
24152706 |
T |
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| Q |
367 |
tggttaatgaaatgagttaagtttgttg |
394 |
Q |
| |
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|| | ||||||||||||||| ||||||| |
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| T |
24152707 |
tgatgaatgaaatgagttaaatttgttg |
24152734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 78 - 289
Target Start/End: Complemental strand, 44006786 - 44006577
Alignment:
| Q |
78 |
gggtctaaagcaagctctactgtgttcttatgaatttaggcttctgcaaagtgtttattgaactagattccaaactactcgtggacggcatggcggggag |
177 |
Q |
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|||| ||||||||||| || |||| ||||||||| || |||||| ||||| || ||||||||||||||||||||| || | || ||||||||||| || |
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| T |
44006786 |
gggtttaaagcaagctttaatgtgg-cttatgaatataagcttctccaaagcgtcaattgaactagattccaaactagtcatagatggcatggcgggaag |
44006688 |
T |
|
| Q |
178 |
accaagtcatacaacagagtggggtagtattttatgtgcttgcaaaacatttttatattctttaccaaactttcagataagttttcttcggagacaaaca |
277 |
Q |
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||| ||||||| ||||||| ||| ||||| ||||| ||||| | ||| | || |||||||||||||||||| || | ||||| ||||||||||||| |
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| T |
44006687 |
acctagtcatagaacagag-gggatagtactttattggcttgtacgacaatcttgtattctttaccaaacttttggagaggttttattcggagacaaacc |
44006589 |
T |
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| Q |
278 |
aacaatgttgct |
289 |
Q |
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|||||||||||| |
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| T |
44006588 |
aacaatgttgct |
44006577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 244 - 291
Target Start/End: Complemental strand, 21330832 - 21330785
Alignment:
| Q |
244 |
aaactttcagataagttttcttcggagacaaacaaacaatgttgctca |
291 |
Q |
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||||||| ||||||||||| |||||||||||| ||| ||||||||||| |
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| T |
21330832 |
aaactttaagataagttttattcggagacaaataaataatgttgctca |
21330785 |
T |
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