View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20469_low_19 (Length: 403)
Name: NF20469_low_19
Description: NF20469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20469_low_19 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 11 - 385
Target Start/End: Original strand, 14725546 - 14725920
Alignment:
| Q |
11 |
agcacagaacaacaaaatcaaattnnnnnnngaaacaggtatgcaatttctaaagtaagagtcaaaactagccttctatatgcagcaagactgataggaa |
110 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14725546 |
agcacagaacaacaaaatcaaattaaaaaaagaaacaggtatgcaatttctaaagtaagagtcaaaactagccttctatatgcagcaagactgataggaa |
14725645 |
T |
|
| Q |
111 |
caggtttataattcatatacatcaattgaatccttactttccaccttcaatgtaatagttctcctagtaagagtcttcgcatatattttcattaccacca |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14725646 |
caggtttataattcatatacatcaattgaatccttactttccaccttcaatgtaatagttctcctagtaagagtcttcgcatatattttcattaccacca |
14725745 |
T |
|
| Q |
211 |
cgaaccagcaaaaccatattataatgagtataaccatcttgaagctgctttctagcaactataaacttagtggaatacccactttctcctgaatattgaa |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14725746 |
cgaaccagcaaaaccatattataatgagtataaccatcttgaagctgctttctagcaactataaacttagtggaatacccactttctcctgaatattgaa |
14725845 |
T |
|
| Q |
311 |
ttcacataacctattgtacctgaactctctccatcagcaccaaatgaagtgtagattctgtttgaatgttgtaat |
385 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14725846 |
ttcacataacctattgtatctgaactctctccatcagcaccaaatgaagtgtagattctgtttgaatgttgtaat |
14725920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 11 - 385
Target Start/End: Complemental strand, 17597964 - 17597590
Alignment:
| Q |
11 |
agcacagaacaacaaaatcaaattnnnnnnngaaacaggtatgcaatttctaaagtaagagtcaaaactagccttctatatgcagcaagactgataggaa |
110 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17597964 |
agcacagaacaacaaaatcaaattaaaaaaagaaacaggtatgcaatttctaaagtaagagtcaaaactagccttctatatgcagcaagactgataggaa |
17597865 |
T |
|
| Q |
111 |
caggtttataattcatatacatcaattgaatccttactttccaccttcaatgtaatagttctcctagtaagagtcttcgcatatattttcattaccacca |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17597864 |
caggtttataattcatatacatcaattgaatccttactttccaccttcaatgtaatagttctcctagtaagagtcttcgcatatattttcattaccacca |
17597765 |
T |
|
| Q |
211 |
cgaaccagcaaaaccatattataatgagtataaccatcttgaagctgctttctagcaactataaacttagtggaatacccactttctcctgaatattgaa |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17597764 |
cgaaccagcaaaaccatattataatgagtataaccatcttgaagctgctttctagcaactataaacttagtggaatacccactttctcctgaatattgaa |
17597665 |
T |
|
| Q |
311 |
ttcacataacctattgtacctgaactctctccatcagcaccaaatgaagtgtagattctgtttgaatgttgtaat |
385 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17597664 |
ttcacataacctattgtatctgaactctctccatcagcaccaaatgaagtgtagattctgtttgaatgttgtaat |
17597590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 51 - 202
Target Start/End: Original strand, 31249233 - 31249396
Alignment:
| Q |
51 |
atgcaatttctaaagtaagagtcaaaactagccttctatatgcagcaag-actgataggaacaggtttataattcatatacat-----------caattg |
138 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||| |||||||| ||| ||| ||||||||| ||| |||||| |||||||| ||| || |
|
|
| T |
31249233 |
atgccatttctaaagtaagtgtcaaaactagccttccatatgcagtaagtactaataggaacatgttcataatttatatacattatttaattatcaagtg |
31249332 |
T |
|
| Q |
139 |
aatccttactttccaccttcaatgtaatagttctcctagtaagagtcttcgcatatattttcat |
202 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||| |||||| ||||| ||||||||||||| |
|
|
| T |
31249333 |
aatcattactttccacctttaatgtaatagttctcccggtaagattcttcacatatattttcat |
31249396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 346 - 385
Target Start/End: Original strand, 31249561 - 31249600
Alignment:
| Q |
346 |
agcaccaaatgaagtgtagattctgtttgaatgttgtaat |
385 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
31249561 |
agcaccaaatgaagtgcggattctgtttgaatgttgtaat |
31249600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University