View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20469_low_20 (Length: 401)
Name: NF20469_low_20
Description: NF20469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20469_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 13 - 385
Target Start/End: Original strand, 4652319 - 4652701
Alignment:
| Q |
13 |
aatattgtcgactccaacaaaaatgccaaaaggcatattataagtatgtaccttgtaagtagtct-----gcaacatcatctccattacgttggtacaat |
107 |
Q |
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| T |
4652319 |
aatattgtcgattccaacaaaaatgccaaaaggcatattataagtatgtaccttgtaaatagtctcaaatgcaacatcatctccattacgttggtacaat |
4652418 |
T |
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| Q |
108 |
tcaaaacaat-----gatgtggagaccaaaatatattttctagtcttttttctttatcaacagtgaatgcaaattggaagcatgagttttcatccttgga |
202 |
Q |
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| T |
4652419 |
tcaaaacaatataatgatgtggagaccaaaatatattttctagtcttttttctttatcaacagtaaatacaaattggaagcatgagttttcatccttgga |
4652518 |
T |
|
| Q |
203 |
aaacttacaaagtcgtaaaagatcattaacatcaccattcatgttatcttgatgaatcttattaaagaaattgtgaatatcttttcgaagaaatcgaaga |
302 |
Q |
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| T |
4652519 |
aaacttacaaagttgtaaaagatcattaacatcaccattcatgttatcttgatgaatcttattaaagaaattatgaatatcttttcgaagaaatcgaaga |
4652618 |
T |
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| Q |
303 |
tctccatgttttacatttttctcaagctccataacacccattatttgtttgaccgaaagatcagcttcttttaatagcaatat |
385 |
Q |
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| T |
4652619 |
tctccatgttttacgtttttctcaagctccataacacgcattatttgtttgaccgaaagatcagcttcttttaatagcaatat |
4652701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 16 - 386
Target Start/End: Original strand, 16149727 - 16150102
Alignment:
| Q |
16 |
attgtcgactccaacaaaaatgccaaaaggcatattataagtatgtaccttgtaagtagtct-----gcaacatcatctccattacgttggtacaattca |
110 |
Q |
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| T |
16149727 |
attgtcgactccaacaaaaatgccaaaaggcatattataagtatttaccttgtaagtagtatcaaatgcaacagcatctccatactgttggtacaattca |
16149826 |
T |
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| Q |
111 |
aaacaatgatgtggagaccaaaatatattttctagtcttttttctttatcaacagtgaatgcaaattggaagcatgagttttcatccttggaaaacttac |
210 |
Q |
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| T |
16149827 |
aaacaatgaggtggagaccaaaatatattttctagtcttttttctttatcaaccgtaaattcaaattggaagcatgagttttcttccttggataacttac |
16149926 |
T |
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| Q |
211 |
aaagtcgtaaaagatcattaacatcaccattcatgttatcttgatgaatcttattaaagaaattgtgaatatcttttcgaagaaatcgaagatctccatg |
310 |
Q |
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| T |
16149927 |
aaagttgtaaaagatcattagcatcaccattcatgttatcttgatgaatcttattaaagaaattatgaatatctttctcaagaaatcgaagatctccatg |
16150026 |
T |
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| Q |
311 |
ttttacatttttctcaagctccataacacccattatttgtttgaccgaaagatcagcttcttttaatagcaatatc |
386 |
Q |
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| T |
16150027 |
ttttacatttttctcaagctccataacacgcattatttgcttgactgaaagatcggcttcttttaatagcaatatc |
16150102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 324 - 386
Target Start/End: Complemental strand, 23302271 - 23302209
Alignment:
| Q |
324 |
tcaagctccataacacccattatttgtttgaccgaaagatcagcttcttttaatagcaatatc |
386 |
Q |
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| T |
23302271 |
tcaagctccataacacgcattatttgcttgactgaaagatctgcttcttttaatagcaatatc |
23302209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 23302332 - 23302273
Alignment:
| Q |
16 |
attgtcgactccaacaaaaatgccaaaaggcatattataagtatgtaccttgtaagtagt |
75 |
Q |
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|||||||| | ||||||| ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
23302332 |
attgtcgattacaacaaagatgccaaaaggcatattataagtatttaccttgtaagtagt |
23302273 |
T |
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