View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20469_low_22 (Length: 389)
Name: NF20469_low_22
Description: NF20469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20469_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 292; Significance: 1e-164; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 19 - 374
Target Start/End: Complemental strand, 11300335 - 11299980
Alignment:
| Q |
19 |
aaaggtaattaaggtttatcaaaataatgaagtcaataaaagaaaaggaatcccaaagtaaaatcaataattgcggtaatgaaatttgttgatacatata |
118 |
Q |
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| T |
11300335 |
aaagttaattaaggtttagcaaaataatgaagtcaataaaagaaaaggaatcccaaagtaaaatcaataattgcggtaatgaaatttgttgatacataaa |
11300236 |
T |
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| Q |
119 |
acttaaggaaatttctattactttttatgtattttttgtaaaaatacacaaaaattaagtaaaattccctcagcataacaatatataattaaaatacctg |
218 |
Q |
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| T |
11300235 |
acttgaggaaatttctattactttttatgtattttttgtaaaaatacacaaaagttaagtaaaattccctcatcataacaatatctaattaaaatacctg |
11300136 |
T |
|
| Q |
219 |
tgaaatatgacattagaattgcgcggtctaggtgtagcttcttacagatgagattcaaaaaccatgatccaggacccctgcgcattaatnnnnnnnnggt |
318 |
Q |
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| T |
11300135 |
tgaaatatgacattagaattgcgcggtctaggtgtagcctctcacagatgagattcaaaaaccatgatccaggacccctgcgcattaataaaaaaaaggt |
11300036 |
T |
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| Q |
319 |
taattaagtaaatgattcctatgaatattaaaaattatgtaaccaacgtaatttat |
374 |
Q |
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| T |
11300035 |
taattaagtaaatgatttctatgaatattaaaaattatgtaaccaacgtaatttat |
11299980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 17 - 184
Target Start/End: Complemental strand, 11294459 - 11294291
Alignment:
| Q |
17 |
tgaaaggtaattaaggtttatcaaaataatgaagtcaataaaagaaaaggaatcccaaagtaaaatcaataattgcggtaatgaaatttgttgatacata |
116 |
Q |
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| T |
11294459 |
tgaaaggtaattaaggattatcaaaataataaaataaaataaaaaataagaatcccaaaataaaatcaataattgcagcaatctaatttgttgattcata |
11294360 |
T |
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| Q |
117 |
taacttaaggaaatttctatt-actttttatgtattttttgtaaaaatacacaaaaattaagtaaaatt |
184 |
Q |
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| T |
11294359 |
aaacttaaggaaaattctattaattttttatgtattttttagaaaaatacacaaaaattaaggaaaatt |
11294291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 202 - 307
Target Start/End: Complemental strand, 11294290 - 11294185
Alignment:
| Q |
202 |
tataattaaaatacctgtgaaatatgacattagaattgcgcggtctaggtgtagcttcttacagatgagattcaaaaaccatgatccaggacccctgcgc |
301 |
Q |
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|||||||||| ||||||||||| ||||| |||| || | | |||||||| |||| || ||||||||||||||||| |||||||||||||||| | |
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| T |
11294290 |
tataattaaagtacctgtgaaaattgacagtagatttacacagtctaggtttagcctcacacagatgagattcaaaagatctgatccaggacccctgttc |
11294191 |
T |
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| Q |
302 |
attaat |
307 |
Q |
| |
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|||||| |
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| T |
11294190 |
attaat |
11294185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 353
Target Start/End: Original strand, 42599506 - 42599543
Alignment:
| Q |
316 |
ggttaattaagtaaatgattcctatgaatattaaaaat |
353 |
Q |
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| T |
42599506 |
ggttaattaagtaaatgactcctataaatattaaaaat |
42599543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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