View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20469_low_26 (Length: 383)

Name: NF20469_low_26
Description: NF20469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20469_low_26
NF20469_low_26
[»] chr6 (15 HSPs)
chr6 (7-371)||(31562817-31563181)
chr6 (26-302)||(33262346-33262616)
chr6 (67-299)||(33387877-33388109)
chr6 (26-312)||(33271514-33271782)
chr6 (25-307)||(33304199-33304475)
chr6 (28-299)||(33644560-33644825)
chr6 (87-291)||(28870242-28870446)
chr6 (67-307)||(33285309-33285552)
chr6 (174-312)||(9166471-9166609)
chr6 (165-312)||(33398782-33398929)
chr6 (28-299)||(33057301-33057554)
chr6 (173-317)||(33409683-33409827)
chr6 (28-119)||(33398957-33399042)
chr6 (251-302)||(33358653-33358704)
chr6 (68-125)||(33409869-33409926)
[»] scaffold1408 (1 HSPs)
scaffold1408 (21-317)||(349-639)
[»] scaffold0428 (1 HSPs)
scaffold0428 (21-317)||(6095-6385)
[»] chr4 (6 HSPs)
chr4 (160-301)||(31499201-31499342)
chr4 (89-301)||(31472625-31472837)
chr4 (87-301)||(31479081-31479295)
chr4 (165-227)||(31157018-31157080)
chr4 (29-70)||(31157172-31157213)
chr4 (90-138)||(31504269-31504317)
[»] chr2 (1 HSPs)
chr2 (160-312)||(17441014-17441160)


Alignment Details
Target: chr6 (Bit Score: 357; Significance: 0; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 7 - 371
Target Start/End: Original strand, 31562817 - 31563181
Alignment:
Q  7 gtgagaagaaatggtggactacaggattggtcatttttaactgtccgaaattggctgagagtgagagggagcattgcaggagcatgacattttcatggat 106  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31562817 gtgagaacaaatggtggactacaggattggtcatttttaactgtccgaaattggctgagagtgagagggagcattgcaggagcatgacattttcatggat 31562916  T
Q  107 ggcacaattcattaaggcatatccacactcctaccctgcctatttggatgagtttcatattgttgttccaggaagtgaaataccgaattggatcaacaat 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31562917 ggcacaattcattaaggcatatccacactcctaccctgcctatttggatgagtttcatattgttgttccaggaagtgaaataccgaattggatcaacaat 31563016  T
Q  207 catagcatgggtgattcaataccaatagagttctctcctcctatgcatgacaatatcaatgataccattggctttgtatgttgtgcagtattttccgtgg 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  31563017 catagcatgggtgattcaataccaatagagttctctcctcctatgcatgacaatatcaatgatatcattggctttgtatgttgtgcagtattttccgtgg 31563116  T
Q  307 cgcctccagattcaatattcacaccatgggatccaccgtgggtcagaattacgggtataagtgat 371  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31563117 cgcctccagattcaatattcacaccatgggatccaccgtgggtcagaattacgggtataagtgat 31563181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 26 - 302
Target Start/End: Complemental strand, 33262616 - 33262346
Alignment:
Q  26 tacaggattggtcatttttaactgtccgaaattggctgagagtgagagggagcattgcaggagcatgacattttcatggatggcacaattcattaaggca 125  Q
    |||||||||||||||||| |||||||| |||||||      |||||||||| | |||||| ||||||||||||||||||| | ||||||||||| | |||    
T  33262616 tacaggattggtcattttcaactgtccaaaattgg------gtgagagggaacgttgcagtagcatgacattttcatggacgacacaattcattcaagca 33262523  T
Q  126 tatccacactcctaccctgcctatttggatgagtttcatattgttgttccaggaagtgaaataccgaattggatcaacaatcatagcatgggtgattcaa 225  Q
    || | ||| ||||||||| | ||||||||||||||||| ||||||  |||||||| ||||||||| | ||||||||||||||| ||||||||||||||||    
T  33262522 taccaacaatcctaccctacttatttggatgagtttcaaattgttagtccaggaaatgaaataccaagttggatcaacaatcagagcatgggtgattcaa 33262423  T
Q  226 taccaatagagttctctcctcctatgcatgacaatatcaatgataccattggctttgtatgttgtgcagtattttcc 302  Q
    ||||| ||||     |||||  ||||||||| |||| |||| ||| |||||||||| |||||||||  |||||||||    
T  33262422 taccagtagaccaaactcctattatgcatgataataacaataatatcattggctttctatgttgtgttgtattttcc 33262346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 67 - 299
Target Start/End: Complemental strand, 33388109 - 33387877
Alignment:
Q  67 gtgagagggagcattgcaggagcatgacattttcatggatggcacaattcattaaggcatatccacactcctaccctgcctatttggatgagtttcatat 166  Q
    |||| ||||||  |||||| ||||||||||||||||||||| ||||||| ||||||||| | | |||  |||||||||||||||| |||  | |||| ||    
T  33388109 gtgatagggagtgttgcagtagcatgacattttcatggatgacacaatttattaaggcaaaccgacaaacctaccctgcctattttgatacgattcaaat 33388010  T
Q  167 tgttgttccaggaagtgaaataccgaattggatcaacaatcatagcatgggtgattcaataccaatagagttctctcctcctatgcatgacaatatcaat 266  Q
    ||||  | |||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||    |  |||  |||||||||||||| ||||    
T  33388009 tgttactacaggaagtgaaataccgagttggatcaacaatcagagcatgggtgattcaatactaatagacaaattgcctattatgcatgacaataacaat 33387910  T
Q  267 gataccattggctttgtatgttgtgcagtattt 299  Q
     ||| |||||||||| |||||||||||||||||    
T  33387909 aatatcattggctttctatgttgtgcagtattt 33387877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 26 - 312
Target Start/End: Complemental strand, 33271782 - 33271514
Alignment:
Q  26 tacaggattggtcatttttaactgtccgaaattggctgagagtgagagggagcattgcaggagcatgacattttcatggatggcacaattcattaaggca 125  Q
    |||||||||||||||||| |||||||| |||||||||||  |||||||||| | |||||| ||| |||||||||||||||||  ||||||||||| ||||    
T  33271782 tacaggattggtcattttcaactgtccaaaattggctgactgtgagagggaacgttgcagtagcttgacattttcatggatgatacaattcattatggca 33271683  T
Q  126 tatccacactcctaccctgcctatttggatgagtttcatattgttgttccaggaagtgaaataccgaattggatcaacaatcatagcatgggtgattcaa 225  Q
     | || || || ||         |||| |||||||||||||| |   |||||||||||||||||| | ||||||||||||||| |||||||||||||| |    
T  33271682 aacccgcaatctta---------tttgaatgagtttcatattataactccaggaagtgaaataccaagttggatcaacaatcagagcatgggtgattcga 33271592  T
Q  226 taccaatagagttctctcctcctatgcatgacaatatcaatgataccattggctttgtatgttgtgcagtattttccgtggcgcctc 312  Q
    |||||||||| |||||| || |||||||||         || ||||||||||||||||||| |||| ||||||||||||||| ||||    
T  33271591 taccaatagaattctcttctgctatgcatg---------ataataccattggctttgtatgctgtgtagtattttccgtggcacctc 33271514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 25 - 307
Target Start/End: Complemental strand, 33304475 - 33304199
Alignment:
Q  25 ctacaggattggtcatttttaactgtccgaaattggctgagagtgagagggagcattgcaggagcatgacattttcatggatggcacaattcattaaggc 124  Q
    ||||||||||| ||||||| |||||||| |||||||      |||||||||| | |||||| |||||||||||||||||| || ||||||||||| ||||    
T  33304475 ctacaggattgttcattttcaactgtccaaaattgg------gtgagagggaacgttgcagtagcatgacattttcatggttgacacaattcattgaggc 33304382  T
Q  125 atatccacactcctaccctgcctatttggatgagtttcatattgttgttccaggaagtgaaataccgaattggatcaacaatcatagcatgggtgattca 224  Q
    | |  |||| ||||||||| | |  || |||  | |||| ||||||  |||||||| ||||||||| | ||||||||||||| | ||| |||||||||||    
T  33304381 aaactcacaatcctaccctacgtcctttgattggattcaaattgttactccaggaaatgaaataccaatttggatcaacaataagagcgtgggtgattca 33304282  T
Q  225 ataccaatagagttctctcctcctatgcatgacaatatcaatgataccattggctttgtatgttgtgcagtattttccgtggc 307  Q
    |||| ||||||    ||||||  |||||||||||||| |||| ||| |||||||||| |||||||||| ||||||||| ||||    
T  33304281 atacaaatagaccgatctcctattatgcatgacaataacaattatatcattggctttctatgttgtgcggtattttccatggc 33304199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 28 - 299
Target Start/End: Original strand, 33644560 - 33644825
Alignment:
Q  28 caggattggtcatttttaactgtccgaaattggctgagagtgagagggagcattgcaggagcatgacattttcatggatggcacaattcattaaggcata 127  Q
    |||||||||||||||| |||||| | |||||||      |||||||||| | ||||||||||||||||||||||||||||  |||||||||| ||||| |    
T  33644560 caggattggtcattttcaactgttcaaaattgg------gtgagagggaacgttgcaggagcatgacattttcatggatgatacaattcattcaggcaaa 33644653  T
Q  128 tccacactcctaccctgcctatttggatgagtttcatattgttgttccaggaagtgaaataccgaattggatcaacaatcatagcatgggtgattcaata 227  Q
     | ||| ||||||||  |||| || |||  |  ||| |||||   |||||||||||||||||| | ||||||||||||||| ||  ||||| ||||||||    
T  33644654 cctacaatcctacccaacctactttgataggactcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggttattcaata 33644753  T
Q  228 ccaatagagttctctcctcctatgcatgacaatatcaatgataccattggctttgtatgttgtgcagtattt 299  Q
    | ||||||    ||||||  |||||||||||||| |||| ||| |||||| |||||||||||||||||||||    
T  33644754 caaatagacgaatctcctattatgcatgacaataacaataatatcattggatttgtatgttgtgcagtattt 33644825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 87 - 291
Target Start/End: Original strand, 28870242 - 28870446
Alignment:
Q  87 agcatgacattttcatggatggcacaattcattaaggcatatccacactcctaccctgcctatttggatgagtttcatattgttgttccaggaagtgaaa 186  Q
    |||||| ||||||||||||||  ||||||||||  |||||| | ||| ||||||| || ||||||||||| |||| ||||||||  ||||||||||||||    
T  28870242 agcatggcattttcatggatgaaacaattcattcgggcataccgacaatcctaccttgtctatttggatgcgtttaatattgttactccaggaagtgaaa 28870341  T
Q  187 taccgaattggatcaacaatcatagcatgggtgattcaataccaatagagttctctcctcctatgcatgacaatatcaatgataccattggctttgtatg 286  Q
    |||| | |||||| |||||||| |||||||||| |||||||| ||||||    ||||||  |||  ||||||||| |||| ||| |||||||||||||||    
T  28870342 taccaagttggattaacaatcagagcatgggtggttcaatacaaatagacgaatctcctattataaatgacaataacaataatatcattggctttgtatg 28870441  T
Q  287 ttgtg 291  Q
    |||||    
T  28870442 ttgtg 28870446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 67 - 307
Target Start/End: Complemental strand, 33285552 - 33285309
Alignment:
Q  67 gtgagagggagcattgcaggagcatgacattttcatggatggcacaattcattaaggcatatccacactcctaccctgc---ctatttggatgagtttca 163  Q
    |||| ||||| | |||||| |||||| ||||||||||||||  |||||||||  ||||||| | |||||  ||||||||   ||  || || | | ||||    
T  33285552 gtgaaagggaacgttgcagtagcatggcattttcatggatgatacaattcatccaggcataccaacacttttaccctgcgtccttatttgaagggattca 33285453  T
Q  164 tattgttgttccaggaagtgaaataccgaattggatcaacaatcatagcatgggtgattcaataccaatagagttctctcctcctatgcatgacaatatc 263  Q
    |||||||  |||||||||||||||||| | |||||| || ||||| ||| |||||  |||||||||||||||    ||||||  |||||||||||||| |    
T  33285452 tattgttactccaggaagtgaaataccaagttggattaataatcagagcgtgggtagttcaataccaatagacagatctcctattatgcatgacaataac 33285353  T
Q  264 aatgataccattggctttgtatgttgtgcagtattttccgtggc 307  Q
    ||| ||| |||||||||||||||||||||||| |||||||||||    
T  33285352 aataatatcattggctttgtatgttgtgcagtgttttccgtggc 33285309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 174 - 312
Target Start/End: Complemental strand, 9166609 - 9166471
Alignment:
Q  174 ccaggaagtgaaataccgaattggatcaacaatcatagcatgggtgattcaataccaatagagttctctcctcctatgcatgacaatatcaatgatacca 273  Q
    ||||||| ||||||||| | ||||||||||||||  ||| ||| || ||| |||||||||||  |  |||||  |||||||||||||| |||| ||| ||    
T  9166609 ccaggaattgaaataccaagttggatcaacaatcggagcgtggatggttcgataccaatagacctaactcctattatgcatgacaataacaataatatca 9166510  T
Q  274 ttggctttgtatgttgtgcagtattttccgtggcgcctc 312  Q
    ||||||||||||||||||||||||| ||| |||| ||||    
T  9166509 ttggctttgtatgttgtgcagtattctccatggcacctc 9166471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 165 - 312
Target Start/End: Complemental strand, 33398929 - 33398782
Alignment:
Q  165 attgttgttccaggaagtgaaataccgaattggatcaacaatcatagcatgggtgattcaataccaatagagttctctcctcctatgcatgacaatatca 264  Q
    |||||| ||||||||||||||||||| | |||||||||||||||  |  ||||||||||||||| ||||||  | |||||| |||||||||| |||| ||    
T  33398929 attgttattccaggaagtgaaataccaagttggatcaacaatcagtgtgtgggtgattcaatacaaatagacctatctcctgctatgcatgataataaca 33398830  T
Q  265 atgata-ccattggctttgtatgttgtgcagtattttccgtggcgcctc 312  Q
    || | | |||||  |||||||||||||||||||||| || ||| |||||    
T  33398829 atcagagccatt-actttgtatgttgtgcagtatttaccatggtgcctc 33398782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 28 - 299
Target Start/End: Complemental strand, 33057554 - 33057301
Alignment:
Q  28 caggattggtcatttttaactgtccgaaattggctgagagtgagagggagcattgcaggagcatgacattttcatggatggcacaattcattaaggcata 127  Q
    |||||||| ||||||| |||||||| |||||||      |||||||||| |||||||||||||||||| ||| |||||||  |||||||||||||||| |    
T  33057554 caggattgctcattttcaactgtccaaaattgg------gtgagagggaacattgcaggagcatgacacttttatggatgaaacaattcattaaggcaaa 33057461  T
Q  128 tccacactcctaccctgcctatttggatgagtttcatattgttgttccaggaagtgaaataccgaattggatcaacaatcatagcatgggtgattcaata 227  Q
     ||||  ||||   || |         |||| |||| || |||  |||||||||||||||||| | ||||||||||||||| || |||||| ||||||||    
T  33057460 cccacgttcct---cttc---------tgagattcaaatagttaatccaggaagtgaaataccaagttggatcaacaatcagaggatgggttattcaata 33057373  T
Q  228 ccaatagagttctctcctcctatgcatgacaatatcaatgataccattggctttgtatgttgtgcagtattt 299  Q
     |||||||    ||||||  || ||||||||||  |||| ||| ||||||  ||||||||||||||| ||||    
T  33057372 gcaatagaccgatctcctattaggcatgacaatgacaataatatcattggtattgtatgttgtgcagcattt 33057301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 173 - 317
Target Start/End: Complemental strand, 33409827 - 33409683
Alignment:
Q  173 tccaggaagtgaaataccgaattggatcaacaatcatagcatgggtgattcaataccaatagagttctctcctcctatgcatgacaatatcaatgatacc 272  Q
    |||||||||||||||||| | ||||||||||||||| ||| |||||| ||||||| |||| ||    ||||||  |||  ||||||||| |||| |||      
T  33409827 tccaggaagtgaaataccaagttggatcaacaatcagagcgtgggtgcttcaatatcaattgatgaatctcctgttataaatgacaataacaataatatt 33409728  T
Q  273 attggctttgtatgttgtgcagtattttccgtggcgcctccagat 317  Q
    |||||||||||| |||||| | || ||||| |||| |||| ||||    
T  33409727 attggctttgtaagttgtgtattaatttccatggcacctcaagat 33409683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 28 - 119
Target Start/End: Complemental strand, 33399042 - 33398957
Alignment:
Q  28 caggattggtcatttttaactgtccgaaattggctgagagtgagagggagcattgcaggagcatgacattttcatggatggcacaattcatt 119  Q
    |||||||||||||||| |||||| | |||||||      |||||||||| | |||||| |||||||||||||||||||||  ||||||||||    
T  33399042 caggattggtcattttcaactgttcaaaattgg------gtgagagggaacgttgcagtagcatgacattttcatggatgatacaattcatt 33398957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 251 - 302
Target Start/End: Complemental strand, 33358704 - 33358653
Alignment:
Q  251 gcatgacaatatcaatgataccattggctttgtatgttgtgcagtattttcc 302  Q
    ||||||||||| |||| ||  |||||| ||||||||||||||||||||||||    
T  33358704 gcatgacaataacaataatgtcattggttttgtatgttgtgcagtattttcc 33358653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 125
Target Start/End: Complemental strand, 33409926 - 33409869
Alignment:
Q  68 tgagagggagcattgcaggagcatgacattttcatggatggcacaattcattaaggca 125  Q
    ||||||||| | |||||| ||||| ||| |||||||||||||||| |||||| |||||    
T  33409926 tgagagggaacgttgcagtagcatcacaatttcatggatggcacatttcattcaggca 33409869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 21 - 317
Target Start/End: Complemental strand, 639 - 349
Alignment:
Q  21 tggactacaggattggtcatttttaactgtccgaaattggctgagagtgagagggagcattgcaggagcatgacattttcatggatggcacaattcatta 120  Q
    ||||||| ||||||||||||||| |||||||| |||||||      ||||||||||   ||| || ||||| |||||||||||||||  ||||||||||     
T  639 tggactaaaggattggtcattttcaactgtccaaaattgg------gtgagagggaatgttgtagtagcataacattttcatggatgaaacaattcattc 546  T
Q  121 aggcatatccacactcctaccctgcctatttggatgagtttcatattgttgttccaggaagtgaaataccgaattggatcaacaatcatagcatgggtga 220  Q
    ||||| | | ||| ||||||  | | |||||| ||||| |||| ||||||  |||||||||||||||||| |  |||||||||||||| ||||||||||     
T  545 aggcaaaccaacaatcctacggtccgtatttgtatgagcttcaaattgttactccaggaagtgaaataccaagctggatcaacaatcagagcatgggtgg 446  T
Q  221 ttcaataccaatagagttctctcctcctatgcatgacaatatcaatgataccattggctttgtatgttgtgcagtattttccgtggcgcctccagat 317  Q
    |||||||| ||||||    ||||||  ||| ||||||||||  ||| ||| |||||||||||||| |||||||||||||| | |||| |||| ||||    
T  445 ttcaatactaatagacgaatctcctgttatacatgacaataagaataatatcattggctttgtattttgtgcagtattttgcatggcacctcaagat 349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 21 - 317
Target Start/End: Complemental strand, 6385 - 6095
Alignment:
Q  21 tggactacaggattggtcatttttaactgtccgaaattggctgagagtgagagggagcattgcaggagcatgacattttcatggatggcacaattcatta 120  Q
    ||||||| ||||||||||||||| |||||||| |||||||      ||||||||||   ||| || ||||| |||||||||||||||  ||||||||||     
T  6385 tggactaaaggattggtcattttcaactgtccaaaattgg------gtgagagggaatgttgtagtagcataacattttcatggatgaaacaattcattc 6292  T
Q  121 aggcatatccacactcctaccctgcctatttggatgagtttcatattgttgttccaggaagtgaaataccgaattggatcaacaatcatagcatgggtga 220  Q
    ||||| | | ||| ||||||  | | |||||| ||||| |||| ||||||  |||||||||||||||||| |  |||||||||||||| ||||||||||     
T  6291 aggcaaaccaacaatcctacggtccgtatttgtatgagcttcaaattgttactccaggaagtgaaataccaagctggatcaacaatcagagcatgggtgg 6192  T
Q  221 ttcaataccaatagagttctctcctcctatgcatgacaatatcaatgataccattggctttgtatgttgtgcagtattttccgtggcgcctccagat 317  Q
    |||||||| ||||||    ||||||  ||| ||||||||||  ||| ||| |||||||||||||| |||||||||||||| | |||| |||| ||||    
T  6191 ttcaatactaatagacgaatctcctgttatacatgacaataagaataatatcattggctttgtattttgtgcagtattttgcatggcacctcaagat 6095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 160 - 301
Target Start/End: Original strand, 31499201 - 31499342
Alignment:
Q  160 ttcatattgttgttccaggaagtgaaataccgaattggatcaacaatcatagcatgggtgattcaataccaatagagttctctcctcctatgcatgacaa 259  Q
    |||||||||||  |||||||||||||||| | | |||| | || ||||| |||| |||||||||||||| |||||| |  |||||   ||| ||||||||    
T  31499201 ttcatattgttactccaggaagtgaaatatcaagttggtttaagaatcagagcaagggtgattcaatacgaatagactcatctcccattatccatgacaa 31499300  T
Q  260 tatcaatgataccattggctttgtatgttgtgcagtattttc 301  Q
    || |||| ||| ||||||||||||||||||||||||||||||    
T  31499301 taacaataatatcattggctttgtatgttgtgcagtattttc 31499342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 89 - 301
Target Start/End: Original strand, 31472625 - 31472837
Alignment:
Q  89 catgacattttcatggatggcacaattcattaaggcatatccacactcctaccctgcctatttggatgagtttcatattgttgttccaggaagtgaaata 188  Q
    |||||||||||||||||||  |||| ||||| ||||| ||||||| |||| ||||| || ||  |||    |||| ||||||  ||||||||||||||||    
T  31472625 catgacattttcatggatgatacaactcattcaggcaaatccacaatccttccctgactgttatgatataattcagattgttactccaggaagtgaaata 31472724  T
Q  189 ccgaattggatcaacaatcatagcatgggtgattcaataccaatagagttctctcctcctatgcatgacaatatcaatgataccattggctttgtatgtt 288  Q
    || | |||| |||||||||| | || ||||||||| |||| | |||| |  |||||   |||||||||||||| |||| ||| |||||| | | ||||||    
T  31472725 ccaagttggttcaacaatcagaacaagggtgattcgatacgattagactcatctcccattatgcatgacaataacaataatatcattggttgtatatgtt 31472824  T
Q  289 gtgcagtattttc 301  Q
    ||| |||||||||    
T  31472825 gtgtagtattttc 31472837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 87 - 301
Target Start/End: Original strand, 31479081 - 31479295
Alignment:
Q  87 agcatgacattttcatggatggcacaattcattaaggcatatccacactcctaccctgcctatttggatgagtttcatattgttgttccaggaagtgaaa 186  Q
    |||||||||||||||||||||  |||||||||| ||||| | | ||| | || || || ||  |  |||  | |||| ||||||  |||||| |||||||    
T  31479081 agcatgacattttcatggatgatacaattcattcaggcaaaccgacaattctcccatgactcctctgatagggttcaaattgttactccaggtagtgaaa 31479180  T
Q  187 taccgaattggatcaacaatcatagcatgggtgattcaataccaatagagttctctcctcctatgcatgacaatatcaatgataccattggctttgtatg 286  Q
    | || | |||| |||||||||| |||| |||| ||| ||||| |||||| |  |||||   |||||| ||||||| |||| ||| | |||||| ||||||    
T  31479181 tgccaagttggttcaacaatcagagcaagggtaatttaatacgaatagattcttctccgattatgcacgacaataacaataatatcgttggctgtgtatg 31479280  T
Q  287 ttgtgcagtattttc 301  Q
    ||||| |||||||||    
T  31479281 ttgtgtagtattttc 31479295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 227
Target Start/End: Complemental strand, 31157080 - 31157018
Alignment:
Q  165 attgttgttccaggaagtgaaataccgaattggatcaacaatcatagcatgggtgattcaata 227  Q
    |||||| |||| |||||||||||||| | |||| |||||||||| |||  |||||||||||||    
T  31157080 attgttattcctggaagtgaaataccaatttggttcaacaatcagagcgagggtgattcaata 31157018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 70
Target Start/End: Complemental strand, 31157213 - 31157172
Alignment:
Q  29 aggattggtcatttttaactgtccgaaattggctgagagtga 70  Q
    ||||||||||||||| |||||||| ||||||| |||||||||    
T  31157213 aggattggtcattttcaactgtcctaaattgggtgagagtga 31157172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 31504269 - 31504317
Alignment:
Q  90 atgacattttcatggatggcacaattcattaaggcatatccacactcct 138  Q
    ||||||||||||||||||  |||||||||||||||| | ||||| ||||    
T  31504269 atgacattttcatggatgatacaattcattaaggcaaacccacaatcct 31504317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 160 - 312
Target Start/End: Original strand, 17441014 - 17441160
Alignment:
Q  160 ttcatattgttgttccaggaagtgaaataccgaattggatcaacaatcatagcatgggtgattcaataccaatagagttctctcctcctatgcatgacaa 259  Q
    |||||||||||  ||||||||| |||||||| | ||||||||||||| | ||| ||||||||||||||  ||||||    ||||||  || |||||||||    
T  17441014 ttcatattgttagtccaggaagcgaaataccaagttggatcaacaataagagcgtgggtgattcaataagaatagaccaatctcctattaagcatgacaa 17441113  T
Q  260 tatcaatgataccattggctttgtatgttgtgcagtattttccgtggcgcctc 312  Q
    ||      ||| |||||| |||||||||||||||||||||||| |||| ||||    
T  17441114 ta------atatcattggttttgtatgttgtgcagtattttccatggcacctc 17441160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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