View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20469_low_28 (Length: 374)

Name: NF20469_low_28
Description: NF20469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20469_low_28
NF20469_low_28
[»] chr8 (10 HSPs)
chr8 (223-367)||(16489290-16489435)
chr8 (1-131)||(34374134-34374263)
chr8 (223-367)||(25642401-25642545)
chr8 (224-297)||(41733430-41733504)
chr8 (224-326)||(7178861-7178964)
chr8 (223-291)||(39896095-39896164)
chr8 (94-131)||(27543647-27543684)
chr8 (94-131)||(43945167-43945204)
chr8 (95-131)||(960519-960555)
chr8 (96-128)||(1600077-1600109)
[»] chr7 (11 HSPs)
chr7 (223-367)||(34871690-34871835)
chr7 (224-325)||(3535899-3536003)
chr7 (94-131)||(19979649-19979686)
chr7 (224-291)||(27855082-27855150)
chr7 (97-131)||(21298015-21298049)
chr7 (231-296)||(47096403-47096469)
chr7 (94-131)||(13279439-13279476)
chr7 (94-131)||(38193216-38193253)
chr7 (94-131)||(39580188-39580225)
chr7 (95-131)||(23371448-23371484)
chr7 (87-131)||(24555923-24555967)
[»] chr3 (16 HSPs)
chr3 (223-367)||(42806119-42806264)
chr3 (224-334)||(22534162-22534273)
chr3 (224-328)||(29542218-29542323)
chr3 (261-328)||(41878857-41878924)
chr3 (223-325)||(52733937-52734042)
chr3 (96-131)||(9322119-9322154)
chr3 (96-131)||(27497799-27497834)
chr3 (96-126)||(51252049-51252079)
chr3 (224-326)||(19979108-19979212)
chr3 (224-253)||(41879560-41879589)
chr3 (94-131)||(47115584-47115621)
chr3 (94-131)||(49880759-49880796)
chr3 (94-131)||(54567765-54567802)
chr3 (224-291)||(6926157-6926225)
chr3 (95-131)||(29185003-29185039)
chr3 (224-291)||(42673928-42673996)
[»] chr1 (10 HSPs)
chr1 (224-367)||(28400619-28400763)
chr1 (223-328)||(28441974-28442080)
chr1 (223-325)||(48973817-48973920)
chr1 (85-131)||(24987597-24987643)
chr1 (94-131)||(51470127-51470164)
chr1 (88-131)||(35034317-35034360)
chr1 (93-131)||(7112491-7112529)
chr1 (90-131)||(32131925-32131966)
chr1 (96-128)||(8928815-8928847)
chr1 (87-131)||(10027999-10028043)
[»] chr6 (11 HSPs)
chr6 (224-328)||(11298423-11298528)
chr6 (261-328)||(29321193-29321260)
chr6 (231-291)||(2343078-2343139)
chr6 (94-131)||(13114396-13114433)
chr6 (94-131)||(14328668-14328705)
chr6 (94-131)||(14421678-14421715)
chr6 (90-126)||(22056476-22056513)
chr6 (86-131)||(23270231-23270276)
chr6 (95-131)||(5334642-5334678)
chr6 (95-131)||(10344049-10344085)
chr6 (94-126)||(24387788-24387820)
[»] chr5 (3 HSPs)
chr5 (223-325)||(21042115-21042218)
chr5 (85-126)||(15061850-15061891)
chr5 (94-126)||(12399613-12399645)
[»] chr4 (7 HSPs)
chr4 (223-325)||(11131016-11131121)
chr4 (95-131)||(51965371-51965407)
chr4 (84-126)||(50879897-50879939)
chr4 (98-127)||(55363691-55363720)
chr4 (95-131)||(550672-550708)
chr4 (87-126)||(20963726-20963766)
chr4 (86-126)||(54555378-54555418)
[»] chr2 (10 HSPs)
chr2 (224-289)||(36590957-36591023)
chr2 (96-131)||(3364583-3364618)
chr2 (96-131)||(23260320-23260355)
chr2 (96-131)||(30371385-30371420)
chr2 (94-131)||(29835100-29835137)
chr2 (90-126)||(44366861-44366898)
chr2 (95-131)||(12028197-12028233)
chr2 (95-131)||(19641445-19641481)
chr2 (95-131)||(19840038-19840074)
chr2 (99-131)||(28484614-28484646)
[»] scaffold0384 (2 HSPs)
scaffold0384 (86-131)||(4449-4494)
scaffold0384 (96-131)||(4249-4284)
[»] scaffold0142 (1 HSPs)
scaffold0142 (92-131)||(34848-34887)
[»] scaffold0010 (1 HSPs)
scaffold0010 (94-131)||(26306-26343)
[»] scaffold0031 (1 HSPs)
scaffold0031 (95-131)||(1826-1862)


Alignment Details
Target: chr8 (Bit Score: 118; Significance: 4e-60; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 223 - 367
Target Start/End: Original strand, 16489290 - 16489435
Alignment:
Q  223 gaagaaactaaaatgagatatattaccacaataaggcattcctagcataaggtgtacaaaggaataaaagccttaacaaagatacaaagtatgaaaatta 322  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  16489290 gaagaaactaaaatgagatatattaccacaataaggccttcctagcacaaggtgtacaaaggaataaaagccttaacaaaaatacaaagtatgaaaatta 16489389  T
Q  323 caagaatca-caaaaaagaagcaccacacaactagccaccaaaaac 367  Q
    |||||| || ||||||| ||||||||||||||||||||||||||||    
T  16489390 caagaagcaccaaaaaacaagcaccacacaactagccaccaaaaac 16489435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 34374134 - 34374263
Alignment:
Q  1 tggatgagttgatccaaaggaaagacacatcaaatgttttgctccctctaatcaatttatcattttataagagacatttctatcaatttaaaattgggtt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  34374134 tggatgagttgatccaaaggaaagacacatcaaatgttttgctccctctaatcaatttatcattttataagagacatttctatcaatttaaaattgagtt 34374233  T
Q  101 aataggtctttactccctgtaatataagtca 131  Q
    ||||||||||||| |||||||||||| ||||    
T  34374234 aataggtctttac-ccctgtaatataggtca 34374263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 223 - 367
Target Start/End: Original strand, 25642401 - 25642545
Alignment:
Q  223 gaagaaactaaaatgagatatattaccacaataaggcattcctagcataaggtgtacaaaggaataaaagccttaacaaagatacaaagtatgaaaatta 322  Q
    ||||||| |||||||| |||||||| |||||  |||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||     
T  25642401 gaagaaattaaaatgatatatattatcacaaacaggccttcctagcacaatgtgtacaaaggaataaaagccttaacaaagatacaaagtatgacaattt 25642500  T
Q  323 caagaatcacaaaaaagaagcaccacacaactagccaccaaaaac 367  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  25642501 caagaatcacaaaaaagaagcaccacacaactagccaccaaaaac 25642545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 224 - 297
Target Start/End: Original strand, 41733430 - 41733504
Alignment:
Q  224 aagaaactaaaatgagatatattaccacaa-taaggcattcctagcataaggtgtacaaaggaataaaagcctta 297  Q
    ||||||||||||||||||||||||||||||  ||||| ||||||| | ||| ||| |||||||||||||||||||    
T  41733430 aagaaactaaaatgagatatattaccacaacaaaggccttcctagtacaagatgtgcaaaggaataaaagcctta 41733504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 326
Target Start/End: Original strand, 7178861 - 7178964
Alignment:
Q  224 aagaaactaaaatgagatatattaccacaataa-ggcattcctagcataaggtgtacaaaggaataaaagccttaacaaagatacaaagtatgaaaatta 322  Q
    ||||||||||||||| |||||||| ||||| || ||| ||||||||| ||||||| | ||||||||| | ||||||  | ||||||||||| |||  |||    
T  7178861 aagaaactaaaatgaaatatattaacacaacaaaggccttcctagcacaaggtgtgcgaaggaataataaccttaaagatgatacaaagtacgaatttta 7178960  T
Q  323 caag 326  Q
    ||||    
T  7178961 caag 7178964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 223 - 291
Target Start/End: Original strand, 39896095 - 39896164
Alignment:
Q  223 gaagaaactaaaatgagatatattaccacaa-taaggcattcctagcataaggtgtacaaaggaataaaa 291  Q
    |||||||||||||||| |||||||| ||||  | |||| |||||||||||||||||  ||||||||||||    
T  39896095 gaagaaactaaaatgaaatatattaacacacctgaggccttcctagcataaggtgtgtaaaggaataaaa 39896164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 131
Target Start/End: Complemental strand, 27543684 - 27543647
Alignment:
Q  94 ttgggttaataggtctttactccctgtaatataagtca 131  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  27543684 ttgggttaataggtctttaccccctgtaatataggtca 27543647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 131
Target Start/End: Original strand, 43945167 - 43945204
Alignment:
Q  94 ttgggttaataggtctttactccctgtaatataagtca 131  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  43945167 ttgggttaataggtctttaccccctgtaatatatgtca 43945204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 131
Target Start/End: Complemental strand, 960555 - 960519
Alignment:
Q  95 tgggttaataggtctttactccctgtaatataagtca 131  Q
    ||||||||||||||||||| |||||||||||| ||||    
T  960555 tgggttaataggtctttaccccctgtaatataggtca 960519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 128
Target Start/End: Original strand, 1600077 - 1600109
Alignment:
Q  96 gggttaataggtctttactccctgtaatataag 128  Q
    |||||||||||||||||| ||||||||||||||    
T  1600077 gggttaataggtctttaccccctgtaatataag 1600109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 114; Significance: 1e-57; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 223 - 367
Target Start/End: Complemental strand, 34871835 - 34871690
Alignment:
Q  223 gaagaaactaaaatgagatatattaccacaataaggcattcctagcataaggtgtacaaaggaataaaagccttaacaaagatacaaagtatgaaaatta 322  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  34871835 gaagaaactaaaatgagatatattaccacaataagaccttcctagcataaggtgtacaaaggaataaaagccttaacaaaaatacaaagtatgaaaatta 34871736  T
Q  323 caagaatca-caaaaaagaagcaccacacaactagccaccaaaaac 367  Q
    |||||| || |||| || ||||||||||||||||||||||||||||    
T  34871735 caagaagcaccaaagaacaagcaccacacaactagccaccaaaaac 34871690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 224 - 325
Target Start/End: Complemental strand, 3536003 - 3535899
Alignment:
Q  224 aagaaactaaaatgagatatattaccacaataa-ggcattcctagcataaggtgtacaaaggaataaaagcc-ttaacaaa-gatacaaagtatgaaaat 320  Q
    ||||| |||||| || ||||||||||||||||| ||| |||||| || ||||||| ||||||||||||| || |||| ||| ||||||||||| |||| |    
T  3536003 aagaagctaaaacgaaatatattaccacaataaaggccttcctaacacaaggtgtgcaaaggaataaaaaccattaaaaaatgatacaaagtacgaaatt 3535904  T
Q  321 tacaa 325  Q
    |||||    
T  3535903 tacaa 3535899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 94 - 131
Target Start/End: Original strand, 19979649 - 19979686
Alignment:
Q  94 ttgggttaataggtctttactccctgtaatataagtca 131  Q
    |||||||||||||||||||| |||||||||||||||||    
T  19979649 ttgggttaataggtctttaccccctgtaatataagtca 19979686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 291
Target Start/End: Complemental strand, 27855150 - 27855082
Alignment:
Q  224 aagaaactaaaatgagatatattaccacaa-taaggcattcctagcataaggtgtacaaaggaataaaa 291  Q
    |||||||||||||||  ||||||||||||| |||||  ||||||||| ||||||| | |||||||||||    
T  27855150 aagaaactaaaatgaattatattaccacaactaaggtcttcctagcacaaggtgtgccaaggaataaaa 27855082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 131
Target Start/End: Original strand, 21298015 - 21298049
Alignment:
Q  97 ggttaataggtctttactccctgtaatataagtca 131  Q
    ||||||||||||||||| |||||||||||||||||    
T  21298015 ggttaataggtctttaccccctgtaatataagtca 21298049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 296
Target Start/End: Complemental strand, 47096469 - 47096403
Alignment:
Q  231 taaaatgagatatattaccacaataa-ggcattcctagcataaggtgtacaaaggaataaaagcctt 296  Q
    |||||||| |||||||||||| |||| ||  ||||||||| ||||||| ||||||||||||| ||||    
T  47096469 taaaatgaaatatattaccaccataaaggtcttcctagcacaaggtgtgcaaaggaataaaaacctt 47096403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 131
Target Start/End: Complemental strand, 13279476 - 13279439
Alignment:
Q  94 ttgggttaataggtctttactccctgtaatataagtca 131  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  13279476 ttgggttaataggtctttaccccctgtaatataggtca 13279439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 131
Target Start/End: Complemental strand, 38193253 - 38193216
Alignment:
Q  94 ttgggttaataggtctttactccctgtaatataagtca 131  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  38193253 ttgggttaataggtctttaccccctgtaatataggtca 38193216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 131
Target Start/End: Complemental strand, 39580225 - 39580188
Alignment:
Q  94 ttgggttaataggtctttactccctgtaatataagtca 131  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  39580225 ttgggttaataggtctttaccccctgtaatataggtca 39580188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 131
Target Start/End: Original strand, 23371448 - 23371484
Alignment:
Q  95 tgggttaataggtctttactccctgtaatataagtca 131  Q
    ||||||||||||||||||| |||||||||||| ||||    
T  23371448 tgggttaataggtctttaccccctgtaatataggtca 23371484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 131
Target Start/End: Complemental strand, 24555967 - 24555923
Alignment:
Q  87 tttaaaattgggttaataggtctttactccctgtaatataagtca 131  Q
    |||||||| |||||||||||| ||||| |||||||||||| ||||    
T  24555967 tttaaaatagggttaataggtttttaccccctgtaatataggtca 24555923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 7e-37; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 223 - 367
Target Start/End: Original strand, 42806119 - 42806264
Alignment:
Q  223 gaagaaactaaaatgagatatattaccacaataa-ggcattcctagcataaggtgtacaaaggaataaaagccttaacaaagatacaaagtatgaaaatt 321  Q
    ||||||| ||||||||||||||||||||||| || ||| ||||||||| |||| || ||||||||||||||||||||||||||||||||||||| |||||    
T  42806119 gaagaaattaaaatgagatatattaccacaacaaaggccttcctagcacaaggcgtgcaaaggaataaaagccttaacaaagatacaaagtatggaaatt 42806218  T
Q  322 acaag-aatcacaaaaaagaagcaccacacaactagccaccaaaaac 367  Q
    ||||| || ||| ||||| |||||||||||| ||| |||||||||||    
T  42806219 acaagaaaacac-aaaaataagcaccacacagctaaccaccaaaaac 42806264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 224 - 334
Target Start/End: Complemental strand, 22534273 - 22534162
Alignment:
Q  224 aagaaactaaaatgagatatattaccacaataa-ggcattcctagcataaggtgtacaaaggaataaaagccttaacaaagatacaaagtatgaaaatta 322  Q
    |||||||||||||||||||||||||||||| || ||| ||||||||| ||||||| |||||||||||||||||||| ||||||||||| |||| || |||    
T  22534273 aagaaactaaaatgagatatattaccacaacaaaggccttcctagcacaaggtgtgcaaaggaataaaagccttaaaaaagatacaaaatatggaattta 22534174  T
Q  323 caagaatcacaa 334  Q
    ||||||||||||    
T  22534173 caagaatcacaa 22534162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 224 - 328
Target Start/End: Original strand, 29542218 - 29542323
Alignment:
Q  224 aagaaactaaaatgagatatattaccacaataaggca-ttcctagcataaggtgtacaaaggaataaaagccttaacaaagatacaaagtatgaaaatta 322  Q
    |||||||||||||||||||||||| ||||| || | | ||||||||| ||||||| ||||||||||||| || ||| |||||||||| |||||||| |||    
T  29542218 aagaaactaaaatgagatatattagcacaacaaaggacttcctagcacaaggtgtgcaaaggaataaaaaccctaaaaaagatacaaggtatgaaattta 29542317  T
Q  323 caagaa 328  Q
    ||||||    
T  29542318 caagaa 29542323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 261 - 328
Target Start/End: Complemental strand, 41878924 - 41878857
Alignment:
Q  261 ttcctagcataaggtgtacaaaggaataaaagccttaacaaagatacaaagtatgaaaattacaagaa 328  Q
    ||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  41878924 ttcctagcacaaggtgtgcaaaggaataaaagccttaaaaaagatacaaagtatgaaatttacaagaa 41878857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 223 - 325
Target Start/End: Original strand, 52733937 - 52734042
Alignment:
Q  223 gaagaaactaaaatgagatatattaccacaat-aaggcattcctagcataaggtgtacaaaggaataaaagcc-ttaacaaa-gatacaaagtatgaaaa 319  Q
    |||||| ||||||||| ||||||||||||||| ||||  ||||||||| ||||||| ||||||||||||| || |||||||| || |||||||| ||||     
T  52733937 gaagaagctaaaatgaaatatattaccacaataaaggtcttcctagcacaaggtgtgcaaaggaataaaaacctttaacaaatgaaacaaagtacgaaat 52734036  T
Q  320 ttacaa 325  Q
    ||||||    
T  52734037 ttacaa 52734042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 96 - 131
Target Start/End: Original strand, 9322119 - 9322154
Alignment:
Q  96 gggttaataggtctttactccctgtaatataagtca 131  Q
    ||||||||||||||||||||||||||||||| ||||    
T  9322119 gggttaataggtctttactccctgtaatatatgtca 9322154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 96 - 131
Target Start/End: Original strand, 27497799 - 27497834
Alignment:
Q  96 gggttaataggtctttactccctgtaatataagtca 131  Q
    |||||||||||||||||| |||||||||||||||||    
T  27497799 gggttaataggtctttaccccctgtaatataagtca 27497834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 126
Target Start/End: Original strand, 51252049 - 51252079
Alignment:
Q  96 gggttaataggtctttactccctgtaatata 126  Q
    |||||||||||||||||||||||||||||||    
T  51252049 gggttaataggtctttactccctgtaatata 51252079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 326
Target Start/End: Original strand, 19979108 - 19979212
Alignment:
Q  224 aagaaactaaaatgagatatattaccacaa--taaggcattcctagcataaggtgtacaaaggaataaaagccttaacaaagatacaaagtatgaaaatt 321  Q
    ||||||||||||||| |||||||| |||||   ||||| ||||||||| ||||||| | ||||||||| | ||| ||  | ||||||||||| |||  ||    
T  19979108 aagaaactaaaatgaaatatattaacacaaacaaaggccttcctagcacaaggtgtgcgaaggaataataacctcaaagatgatacaaagtacgaatttt 19979207  T
Q  322 acaag 326  Q
    |||||    
T  19979208 acaag 19979212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 253
Target Start/End: Complemental strand, 41879589 - 41879560
Alignment:
Q  224 aagaaactaaaatgagatatattaccacaa 253  Q
    ||||||||||||||||||||||||||||||    
T  41879589 aagaaactaaaatgagatatattaccacaa 41879560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 131
Target Start/End: Complemental strand, 47115621 - 47115584
Alignment:
Q  94 ttgggttaataggtctttactccctgtaatataagtca 131  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  47115621 ttgggttaataggtctttaccccctgtaatataggtca 47115584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 131
Target Start/End: Complemental strand, 49880796 - 49880759
Alignment:
Q  94 ttgggttaataggtctttactccctgtaatataagtca 131  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  49880796 ttgggttaataggtctttaccccctgtaatataggtca 49880759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 131
Target Start/End: Complemental strand, 54567802 - 54567765
Alignment:
Q  94 ttgggttaataggtctttactccctgtaatataagtca 131  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  54567802 ttgggttaataggtctttaccccctgtaatataggtca 54567765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 291
Target Start/End: Complemental strand, 6926225 - 6926157
Alignment:
Q  224 aagaaactaaaatgagatatattaccacaa-taaggcattcctagcataaggtgtacaaaggaataaaa 291  Q
    |||||| |||||||| |||||||| ||||  | |||| ||||||||| ||||||| |||||||||||||    
T  6926225 aagaaattaaaatgaaatatattaacacacctgaggccttcctagcacaaggtgtgcaaaggaataaaa 6926157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 131
Target Start/End: Complemental strand, 29185039 - 29185003
Alignment:
Q  95 tgggttaataggtctttactccctgtaatataagtca 131  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  29185039 tgggttaataggcctttactccctgtaatataggtca 29185003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 291
Target Start/End: Original strand, 42673928 - 42673996
Alignment:
Q  224 aagaaactaaaatgagatatattaccacaataaggca-ttcctagcataaggtgtacaaaggaataaaa 291  Q
    |||| |||||||||| |||||||| ||  ||||||   ||||||||||||||||||| |||||||||||    
T  42673928 aagagactaaaatgaaatatattaacatcataagggtcttcctagcataaggtgtaccaaggaataaaa 42673996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 224 - 367
Target Start/End: Complemental strand, 28400763 - 28400619
Alignment:
Q  224 aagaaactaaaatgagatatattaccacaataa-ggcattcctagcataaggtgtacaaaggaataaaagccttaacaaagatacaaagtatgaaaatta 322  Q
    ||||||||||||||||||||| |||||||| || ||| ||||||||| |||| || |||||||||||||||||||||||||||||||||||||  |||||    
T  28400763 aagaaactaaaatgagatataataccacaacaaaggccttcctagcacaaggcgtgcaaaggaataaaagccttaacaaagatacaaagtatggtaatta 28400664  T
Q  323 caag-aatcacaaaaaagaagcaccacacaactagccaccaaaaac 367  Q
    |||| || ||| ||||| |||||||| ||| ||| |||||||||||    
T  28400663 caagaaaacac-aaaaacaagcaccatacagctaaccaccaaaaac 28400619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 223 - 328
Target Start/End: Original strand, 28441974 - 28442080
Alignment:
Q  223 gaagaaactaaaatgagatatattaccacaa-taaggcattcctagcataaggtgtacaaaggaataaaagccttaacaaagatacaaagtatgaaaatt 321  Q
    |||||||||||||||||||||||||||||||  ||||| ||||||||| ||||||| |||| |||||||| |||||| |||||||||| |||||||| ||    
T  28441974 gaagaaactaaaatgagatatattaccacaacaaaggccttcctagcacaaggtgtgcaaatgaataaaaaccttaaaaaagatacaaggtatgaaattt 28442073  T
Q  322 acaagaa 328  Q
    |||||||    
T  28442074 acaagaa 28442080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 223 - 325
Target Start/End: Complemental strand, 48973920 - 48973817
Alignment:
Q  223 gaagaaactaaaatgagatatattaccacaa-taaggcattcctagcataaggtgtacaaaggaataaaagccttaaca-aagatacaaagtatgaaaat 320  Q
    |||||||||||||||| |||||||| ||||  |||||| ||||||||| ||||||| ||||||||||||| ||| || | |||| |||||||||||| ||    
T  48973920 gaagaaactaaaatgaaatatattaacacacctaaggccttcctagcacaaggtgtgcaaaggaataaaaacctcaaaagaaga-acaaagtatgaatat 48973822  T
Q  321 tacaa 325  Q
    |||||    
T  48973821 tacaa 48973817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 131
Target Start/End: Original strand, 24987597 - 24987643
Alignment:
Q  85 aatttaaaattgggttaataggtctttactccctgtaatataagtca 131  Q
    |||||||||| |||||||||||||||||| |||||||||||| ||||    
T  24987597 aatttaaaatagggttaataggtctttaccccctgtaatataggtca 24987643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 94 - 131
Target Start/End: Original strand, 51470127 - 51470164
Alignment:
Q  94 ttgggttaataggtctttactccctgtaatataagtca 131  Q
    |||||||||||||||||||| |||||||||||||||||    
T  51470127 ttgggttaataggtctttaccccctgtaatataagtca 51470164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 88 - 131
Target Start/End: Complemental strand, 35034360 - 35034317
Alignment:
Q  88 ttaaaattgggttaataggtctttactccctgtaatataagtca 131  Q
    |||||||||||||||||||||||||  |||||||||||| ||||    
T  35034360 ttaaaattgggttaataggtctttatcccctgtaatataggtca 35034317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Original strand, 7112491 - 7112529
Alignment:
Q  93 attgggttaataggtctttactccctgtaatataagtca 131  Q
    ||||||||||||||||||||| |||||||||||| ||||    
T  7112491 attgggttaataggtctttaccccctgtaatatatgtca 7112529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 131
Target Start/End: Complemental strand, 32131966 - 32131925
Alignment:
Q  90 aaaattgggttaataggtctttactccctgtaatataagtca 131  Q
    ||||| |||||||||||||||||| |||||||||||| ||||    
T  32131966 aaaatagggttaataggtctttaccccctgtaatataggtca 32131925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 128
Target Start/End: Original strand, 8928815 - 8928847
Alignment:
Q  96 gggttaataggtctttactccctgtaatataag 128  Q
    |||||||||||||||||| ||||||||||||||    
T  8928815 gggttaataggtctttaccccctgtaatataag 8928847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 131
Target Start/End: Complemental strand, 10028043 - 10027999
Alignment:
Q  87 tttaaaattgggttaataggtctttactccctgtaatataagtca 131  Q
    |||||| | |||||||||||||||||| |||||||||||| ||||    
T  10028043 tttaaactggggttaataggtctttaccccctgtaatataggtca 10027999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 224 - 328
Target Start/End: Original strand, 11298423 - 11298528
Alignment:
Q  224 aagaaactaaaatgagatatattaccacaataagg-cattcctagcataaggtgtacaaaggaataaaagccttaacaaagatacaaagtatgaaaatta 322  Q
    |||||||||||||||||||||| | ||||| || | | ||||||||| ||||||| ||||||||||| | |||||  |||||||||||||| |||  |||    
T  11298423 aagaaactaaaatgagatatataaacacaacaaagaccttcctagcacaaggtgtgcaaaggaataataaccttagaaaagatacaaagtacgaacttta 11298522  T
Q  323 caagaa 328  Q
    ||||||    
T  11298523 caagaa 11298528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 261 - 328
Target Start/End: Original strand, 29321193 - 29321260
Alignment:
Q  261 ttcctagcataaggtgtacaaaggaataaaagccttaacaaagatacaaagtatgaaaattacaagaa 328  Q
    ||||||||| ||||||| ||||||||||| | |||||  |||||||||||||| |||  |||||||||    
T  29321193 ttcctagcacaaggtgtgcaaaggaataataaccttagaaaagatacaaagtacgaactttacaagaa 29321260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 291
Target Start/End: Complemental strand, 2343139 - 2343078
Alignment:
Q  231 taaaatgagatatattaccacaataa-ggcattcctagcataaggtgtacaaaggaataaaa 291  Q
    |||||||| |||||||||||||  || ||| || |||||||||||||| |||||||||||||    
T  2343139 taaaatgaaatatattaccacatcaaaggcctttctagcataaggtgtgcaaaggaataaaa 2343078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 131
Target Start/End: Original strand, 13114396 - 13114433
Alignment:
Q  94 ttgggttaataggtctttactccctgtaatataagtca 131  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  13114396 ttgggttaataggtctttaccccctgtaatataggtca 13114433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 131
Target Start/End: Complemental strand, 14328705 - 14328668
Alignment:
Q  94 ttgggttaataggtctttactccctgtaatataagtca 131  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  14328705 ttgggttaataggtctttaccccctgtaatataggtca 14328668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 131
Target Start/End: Complemental strand, 14421715 - 14421678
Alignment:
Q  94 ttgggttaataggtctttactccctgtaatataagtca 131  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  14421715 ttgggttaataggtctttaccccctgtaatataggtca 14421678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 126
Target Start/End: Original strand, 22056476 - 22056513
Alignment:
Q  90 aaaattgggttaataggtcttt-actccctgtaatata 126  Q
    |||||||||||||||||||||| |||||||||||||||    
T  22056476 aaaattgggttaataggtctttaactccctgtaatata 22056513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 131
Target Start/End: Complemental strand, 23270276 - 23270231
Alignment:
Q  86 atttaaaattgggttaataggtctttactccctgtaatataagtca 131  Q
    ||||| |||||||||||||||||||||| |||| ||||||| ||||    
T  23270276 atttataattgggttaataggtctttaccccctttaatataggtca 23270231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 131
Target Start/End: Original strand, 5334642 - 5334678
Alignment:
Q  95 tgggttaataggtctttactccctgtaatataagtca 131  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  5334642 tgggttaataggtttttaccccctgtaatataagtca 5334678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 131
Target Start/End: Original strand, 10344049 - 10344085
Alignment:
Q  95 tgggttaataggtctttactccctgtaatataagtca 131  Q
    ||||||||||||||||||| |||||||||||| ||||    
T  10344049 tgggttaataggtctttaccccctgtaatataggtca 10344085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 126
Target Start/End: Complemental strand, 24387820 - 24387788
Alignment:
Q  94 ttgggttaataggtctttactccctgtaatata 126  Q
    |||||||||||||||||||| ||||||||||||    
T  24387820 ttgggttaataggtctttaccccctgtaatata 24387788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 223 - 325
Target Start/End: Complemental strand, 21042218 - 21042115
Alignment:
Q  223 gaagaaactaaaatgagatatattaccacaa-taaggcattcctagcataaggtgtacaaaggaataaaagccttaaca-aagatacaaagtatgaaaat 320  Q
    |||||||||||||||| |||||||| ||||  |||||| ||||||||| ||||||| ||||||||||||| ||| || | |||| |||||||||||| ||    
T  21042218 gaagaaactaaaatgaaatatattaacacacctaaggccttcctagcacaaggtgtgcaaaggaataaaaacctcaaaagaaga-acaaagtatgaatat 21042120  T
Q  321 tacaa 325  Q
    |||||    
T  21042119 tacaa 21042115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 126
Target Start/End: Complemental strand, 15061891 - 15061850
Alignment:
Q  85 aatttaaaattgggttaataggtctttactccctgtaatata 126  Q
    |||| ||||| |||||||||||||||||| ||||||||||||    
T  15061891 aattaaaaatagggttaataggtctttaccccctgtaatata 15061850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 126
Target Start/End: Complemental strand, 12399645 - 12399613
Alignment:
Q  94 ttgggttaataggtctttactccctgtaatata 126  Q
    |||||||||||||||||||| ||||||||||||    
T  12399645 ttgggttaataggtctttaccccctgtaatata 12399613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 325
Target Start/End: Original strand, 11131016 - 11131121
Alignment:
Q  223 gaagaaactaaaatgagatatattaccacaataa-ggcattcctagcataaggtgtacaaaggaataaaagcc-ttaacaaa-gatacaaagtatgaaaa 319  Q
    |||||| ||||||||| |||| |||||||||||| ||  ||||||||| ||||||| ||||||||||||| || |||||||| || |||||||| ||||     
T  11131016 gaagaagctaaaatgaaatatgttaccacaataaaggtcttcctagcacaaggtgtgcaaaggaataaaaacctttaacaaatgaaacaaagtacgaaat 11131115  T
Q  320 ttacaa 325  Q
    ||||||    
T  11131116 ttacaa 11131121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 131
Target Start/End: Original strand, 51965371 - 51965407
Alignment:
Q  95 tgggttaataggtctttactccctgtaatataagtca 131  Q
    |||||||||||||||||||||||||||||||| ||||    
T  51965371 tgggttaataggtctttactccctgtaatataggtca 51965407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 126
Target Start/End: Original strand, 50879897 - 50879939
Alignment:
Q  84 caatttaaaattgggttaataggtctttactccctgtaatata 126  Q
    |||||| |||| ||||||||||||||||||| |||||||||||    
T  50879897 caatttgaaatagggttaataggtctttacttcctgtaatata 50879939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 127
Target Start/End: Original strand, 55363691 - 55363720
Alignment:
Q  98 gttaataggtctttactccctgtaatataa 127  Q
    ||||||||||||||||||||||||||||||    
T  55363691 gttaataggtctttactccctgtaatataa 55363720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 131
Target Start/End: Original strand, 550672 - 550708
Alignment:
Q  95 tgggttaataggtctttactccctgtaatataagtca 131  Q
    ||||||||||||||||||| |||||||||||| ||||    
T  550672 tgggttaataggtctttaccccctgtaatataggtca 550708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 126
Target Start/End: Complemental strand, 20963766 - 20963726
Alignment:
Q  87 tttaaaattgggttaataggtcttta-ctccctgtaatata 126  Q
    |||||||||||||||||||||||||| | ||||||||||||    
T  20963766 tttaaaattgggttaataggtctttacccccctgtaatata 20963726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 54555418 - 54555378
Alignment:
Q  86 atttaaaattgggttaataggtctttactccctgtaatata 126  Q
    ||||| ||||||||||||| |||||||| ||||||||||||    
T  54555418 atttataattgggttaataagtctttaccccctgtaatata 54555378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 289
Target Start/End: Complemental strand, 36591023 - 36590957
Alignment:
Q  224 aagaaactaaaatgagatatattaccacaataa-ggcattcctagcataaggtgtacaaaggaataa 289  Q
    ||||||||||||||| |||||||| ||||  || ||||||||||||||||||||| |||| ||||||    
T  36591023 aagaaactaaaatgaaatatattaacacaccaaaggcattcctagcataaggtgtgcaaaagaataa 36590957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 96 - 131
Target Start/End: Complemental strand, 3364618 - 3364583
Alignment:
Q  96 gggttaataggtctttactccctgtaatataagtca 131  Q
    |||||||||||||||||| |||||||||||||||||    
T  3364618 gggttaataggtctttaccccctgtaatataagtca 3364583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 96 - 131
Target Start/End: Original strand, 23260320 - 23260355
Alignment:
Q  96 gggttaataggtctttactccctgtaatataagtca 131  Q
    ||||||||||||||||||||||||||||||| ||||    
T  23260320 gggttaataggtctttactccctgtaatataggtca 23260355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 96 - 131
Target Start/End: Original strand, 30371385 - 30371420
Alignment:
Q  96 gggttaataggtctttactccctgtaatataagtca 131  Q
    ||||||||||||||||||||||||||||||| ||||    
T  30371385 gggttaataggtctttactccctgtaatataggtca 30371420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 131
Target Start/End: Original strand, 29835100 - 29835137
Alignment:
Q  94 ttgggttaataggtctttactccctgtaatataagtca 131  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  29835100 ttgggttaataggtctttaccccctgtaatataggtca 29835137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 126
Target Start/End: Original strand, 44366861 - 44366898
Alignment:
Q  90 aaaattgggttaataggtcttt-actccctgtaatata 126  Q
    |||||||||||||||||||||| |||||||||||||||    
T  44366861 aaaattgggttaataggtctttaactccctgtaatata 44366898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 131
Target Start/End: Original strand, 12028197 - 12028233
Alignment:
Q  95 tgggttaataggtctttactccctgtaatataagtca 131  Q
    ||||||||||||||||||| |||||||||||| ||||    
T  12028197 tgggttaataggtctttacaccctgtaatataggtca 12028233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 131
Target Start/End: Original strand, 19641445 - 19641481
Alignment:
Q  95 tgggttaataggtctttactccctgtaatataagtca 131  Q
    ||||||||||||||||||| |||||||||||| ||||    
T  19641445 tgggttaataggtctttaccccctgtaatataggtca 19641481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 131
Target Start/End: Original strand, 19840038 - 19840074
Alignment:
Q  95 tgggttaataggtctttactccctgtaatataagtca 131  Q
    ||||||||||||||||||| |||||||||||| ||||    
T  19840038 tgggttaataggtctttaccccctgtaatataggtca 19840074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 131
Target Start/End: Complemental strand, 28484646 - 28484614
Alignment:
Q  99 ttaataggtctttactccctgtaatataagtca 131  Q
    |||||||||||||||||||||||||||| ||||    
T  28484646 ttaataggtctttactccctgtaatataggtca 28484614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0384 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 86 - 131
Target Start/End: Complemental strand, 4494 - 4449
Alignment:
Q  86 atttaaaattgggttaataggtctttactccctgtaatataagtca 131  Q
    ||||||| |||||||||||||||||||| |||||||||||| ||||    
T  4494 atttaaatttgggttaataggtctttaccccctgtaatataggtca 4449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0384; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 96 - 131
Target Start/End: Original strand, 4249 - 4284
Alignment:
Q  96 gggttaataggtctttactccctgtaatataagtca 131  Q
    ||||||||||||||||||||||||||||||| ||||    
T  4249 gggttaataggtctttactccctgtaatataggtca 4284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0142 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 92 - 131
Target Start/End: Complemental strand, 34887 - 34848
Alignment:
Q  92 aattgggttaataggtctttactccctgtaatataagtca 131  Q
    |||||||||||||||||||||| |||||||||||| ||||    
T  34887 aattgggttaataggtctttaccccctgtaatataggtca 34848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 131
Target Start/End: Original strand, 26306 - 26343
Alignment:
Q  94 ttgggttaataggtctttactccctgtaatataagtca 131  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  26306 ttgggttaataggtctttaccccctgtaatataggtca 26343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 131
Target Start/End: Original strand, 1826 - 1862
Alignment:
Q  95 tgggttaataggtctttactccctgtaatataagtca 131  Q
    ||||||||||||||||||| |||||||||||| ||||    
T  1826 tgggttaataggtctttaccccctgtaatataggtca 1862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University