View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20469_low_29 (Length: 369)
Name: NF20469_low_29
Description: NF20469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20469_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 99 - 352
Target Start/End: Original strand, 7039822 - 7040075
Alignment:
| Q |
99 |
ccaccaaccataattgatgtttattggagtttgacgaaataaaagacaaacaaaaagaaattatggaatcgaaaggaaaatgataactatgtatgtccgt |
198 |
Q |
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| T |
7039822 |
ccaccaaccataattgatgtttattggagtttgacgaaataaaagacaaacaaaaagaaattatggaatcgaaaggaaaatgataactatgtatgtccgt |
7039921 |
T |
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| Q |
199 |
aaagtgaatacgaaagaaaaatatgtcggtagagtgcataaaaatttggagactgggagtttgagagcctatatcatatttggttataatagaacgataa |
298 |
Q |
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| T |
7039922 |
aaagtgaatacgaaagaaaaatatgtcggtggagtgcacaaaaatttggagactgagagtttgagagcctatatcagatttggttgtaatagaacgatag |
7040021 |
T |
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| Q |
299 |
gttcagtcggaaaatagtaacaagaatggttataactaactatacagctacgtg |
352 |
Q |
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| T |
7040022 |
gtttactcagaaaatagtaacaagaatggttataactaactatacagctacgtg |
7040075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 141
Target Start/End: Original strand, 7036728 - 7036768
Alignment:
| Q |
101 |
accaaccataattgatgtttattggagtttgacgaaataaa |
141 |
Q |
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| T |
7036728 |
accaaccagaatttatgtttattggagtttgacgaaataaa |
7036768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 99 - 162
Target Start/End: Original strand, 29377257 - 29377320
Alignment:
| Q |
99 |
ccaccaaccataattgatgtttattggagtttgacgaaataaaagacaaacaaaaagaaattat |
162 |
Q |
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| T |
29377257 |
ccaccaaccaaaatttatgttcattagagtttgacgaaataaaagagaaacaaaaagaaattat |
29377320 |
T |
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