View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20469_low_31 (Length: 366)
Name: NF20469_low_31
Description: NF20469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20469_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 53675973 - 53676331
Alignment:
| Q |
1 |
catgtatatcattttatcttgtcttgttatataagccaaaaatgaacctcctttttacaaaattttgtgcctttattatttttagtttt---------ac |
91 |
Q |
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| T |
53675973 |
catgtatatcattttatcttgtcttgttatataagccaaaaatgaacctcctttttacaaaattttgtgcctttattatttttagtttttttttttttac |
53676072 |
T |
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| Q |
92 |
ttccagttggtaggaaagcttgttggactatttgcaattcttgnnnnnnntagttacagtcatcactttatcatcaatgaaactttgagaggacactaac |
191 |
Q |
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| T |
53676073 |
ttccagttggtaggaaagcttgttggactatttgcaattcttgaaaaaaatagttacattcatcactttatcatcaatgaaactttgagaggacactaac |
53676172 |
T |
|
| Q |
192 |
tgttttctctttttctgatggatgataaagtggaaaatatttctgtctctaactaccaaaccttgcaaggttgccacatagccttcattatttttgacat |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53676173 |
tgttttctctttttctgatggatgataaagtggaaaatatttctgtctctaaat--caaaccttgcaaggttgccacatagccttcattatttttgacat |
53676270 |
T |
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| Q |
292 |
acacaacagcattagaggttttattttgtgcaaggggactgtgaaggcgttatgtagaaat |
352 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53676271 |
acacaacagcattagaggttttattttgtgcaaggggactgtgaaggcgttatgtagaaat |
53676331 |
T |
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