View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20469_low_32 (Length: 365)

Name: NF20469_low_32
Description: NF20469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20469_low_32
NF20469_low_32
[»] chr1 (3 HSPs)
chr1 (1-349)||(46344194-46344542)
chr1 (296-349)||(46452014-46452067)
chr1 (296-349)||(46462982-46463035)
[»] chr3 (2 HSPs)
chr3 (103-179)||(2816990-2817066)
chr3 (103-179)||(5823002-5823078)
[»] chr6 (2 HSPs)
chr6 (106-179)||(30967923-30967996)
chr6 (103-179)||(27878436-27878512)
[»] chr4 (4 HSPs)
chr4 (103-170)||(42266426-42266493)
chr4 (109-179)||(21514772-21514842)
chr4 (103-179)||(30949910-30949986)
chr4 (103-179)||(48701548-48701624)
[»] chr5 (1 HSPs)
chr5 (103-179)||(41718924-41719000)
[»] chr2 (1 HSPs)
chr2 (103-179)||(825993-826069)
[»] chr8 (1 HSPs)
chr8 (103-170)||(9443819-9443886)


Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 46344194 - 46344542
Alignment:
Q  1 attgatagtgccctacttctcttcaaattgtattatcatgataacggaaataagtacctcaacataatttccatttctttctagtttacattaatgtttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46344194 attgatagtgccctacttctcttcaaattgtattatcatgataacggaaataagtacctcaacataatttccatttctttctagtttacattaatgtttc 46344293  T
Q  101 actgcgtctaggcaattatggtttcttaaaattgcatttatcttcgattttcacaaggaaaaatttctccaattgaactatagctcttagaaataagaga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46344294 actgcgtctaggcaattatggtttcttaaaattgcatttatcttcgattttcacaaggaaaaatttctccaattgaactatagctcttagaaataagaga 46344393  T
Q  201 ataaaggaaggagaatgccaaaaagtttcgtatacaaaaagtttcatatattgactgctaaccacaaattctataagccttaacagtgtcactaaagaat 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  46344394 ataaaggaaggagaatgccaaaaagtttcgtatacaaaaagtttcatatattgactgctaaccacaaattctataagccttaacagtgtcactaaagaaa 46344493  T
Q  301 tctattacacaagggaggtacccttaacatactctgtaaaagccaaagc 349  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  46344494 tctattacacaagggaggtacccttaacatactctgtaaaggccaaagc 46344542  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 296 - 349
Target Start/End: Complemental strand, 46452067 - 46452014
Alignment:
Q  296 agaattctattacacaagggaggtacccttaacatactctgtaaaagccaaagc 349  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  46452067 agaaatctattacacaagggaggtacccttaacatactctgtaaaagccaaagc 46452014  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 296 - 349
Target Start/End: Complemental strand, 46463035 - 46462982
Alignment:
Q  296 agaattctattacacaagggaggtacccttaacatactctgtaaaagccaaagc 349  Q
    |||| |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  46463035 agaaatctattacacaagggaggtacccttaacatactctgtaaaggccaaagc 46462982  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 103 - 179
Target Start/End: Original strand, 2816990 - 2817066
Alignment:
Q  103 tgcgtctaggcaattatggtttcttaaaattgcatttatcttcgattttcacaaggaaaaatttctccaattgaact 179  Q
    |||||||||||||||||  ||||||||||||||  |||||||| |||| || ||||||||||||||||  |||||||    
T  2816990 tgcgtctaggcaattatcttttcttaaaattgcccttatcttcaatttccaaaaggaaaaatttctcccgttgaact 2817066  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 179
Target Start/End: Original strand, 5823002 - 5823078
Alignment:
Q  103 tgcgtctaggcaattatggtttcttaaaattgcatttatcttcgattttcacaaggaaaaatttctccaattgaact 179  Q
    ||||||||| |||||||  ||||||||||||||  |||||||| |||| || | ||||||||||||||  |||||||    
T  5823002 tgcgtctagacaattatcttttcttaaaattgcccttatcttcaatttccatagggaaaaatttctcccgttgaact 5823078  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 179
Target Start/End: Complemental strand, 30967996 - 30967923
Alignment:
Q  106 gtctaggcaattatggtttcttaaaattgcatttatcttcgattttcacaaggaaaaatttctccaattgaact 179  Q
    ||||||||||||||  ||||||||||||||  |||||||| |||| |||| ||||||||||||||  |||||||    
T  30967996 gtctaggcaattatcttttcttaaaattgcccttatcttcaatttccacagggaaaaatttctcccgttgaact 30967923  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 179
Target Start/End: Original strand, 27878436 - 27878512
Alignment:
Q  103 tgcgtctaggcaattatggtttcttaaaattgcatttatcttcgattttcacaaggaaaaatttctccaattgaact 179  Q
    ||||||||| |||||||  ||||||||||||||  |||||||| |||| || | ||||||||||||||  |||||||    
T  27878436 tgcgtctagacaattatcttttcttaaaattgcccttatcttcaatttccatagggaaaaatttctcccgttgaact 27878512  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 170
Target Start/End: Complemental strand, 42266493 - 42266426
Alignment:
Q  103 tgcgtctaggcaattatggtttcttaaaattgcatttatcttcgattttcacaaggaaaaatttctcc 170  Q
    |||||||||||||||||  ||||||||||||||  |||||||| |||| || | ||||||||||||||    
T  42266493 tgcgtctaggcaattatcttttcttaaaattgcccttatcttcaatttccatagggaaaaatttctcc 42266426  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 179
Target Start/End: Original strand, 21514772 - 21514842
Alignment:
Q  109 taggcaattatggtttcttaaaattgcatttatcttcgattttcacaaggaaaaatttctccaattgaact 179  Q
    |||||||||||  ||||| ||||||||  |||||| | |||| ||||||||||||||||||| ||||||||    
T  21514772 taggcaattattttttctcaaaattgcccttatctacaatttccacaaggaaaaatttctcccattgaact 21514842  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 179
Target Start/End: Original strand, 30949910 - 30949986
Alignment:
Q  103 tgcgtctaggcaattatggtttcttaaaattgcatttatcttcgattttcacaaggaaaaatttctccaattgaact 179  Q
    |||||||||||||||||  ||||||||||||||  |||||||| |||| || | |||||| |||||||  |||||||    
T  30949910 tgcgtctaggcaattatcttttcttaaaattgcccttatcttcaatttccatagggaaaattttctcccgttgaact 30949986  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 179
Target Start/End: Original strand, 48701548 - 48701624
Alignment:
Q  103 tgcgtctaggcaattatggtttcttaaaattgcatttatcttcgattttcacaaggaaaaatttctccaattgaact 179  Q
    ||||||||| |||||||  ||||||||||||||  |||||||| |||| || | ||||||||||||||  |||||||    
T  48701548 tgcgtctagacaattatcttttcttaaaattgcccttatcttcaatttccatagggaaaaatttctcccgttgaact 48701624  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 179
Target Start/End: Complemental strand, 41719000 - 41718924
Alignment:
Q  103 tgcgtctaggcaattatggtttcttaaaattgcatttatcttcgattttcacaaggaaaaatttctccaattgaact 179  Q
    ||||||||| |||||||  ||||||||||||||  |||||||| |||| || | ||||||||||||||  |||||||    
T  41719000 tgcgtctagacaattatcttttcttaaaattgcccttatcttcaatttccatagggaaaaatttctcccgttgaact 41718924  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 179
Target Start/End: Complemental strand, 826069 - 825993
Alignment:
Q  103 tgcgtctaggcaattatggtttcttaaaattgcatttatcttcgattttcacaaggaaaaatttctccaattgaact 179  Q
    |||||||||||||||||  ||||||||||||||  |||||||| |||| || |  |||||||||||||  |||||||    
T  826069 tgcgtctaggcaattatcttttcttaaaattgcccttatcttcaatttccatagcgaaaaatttctcccgttgaact 825993  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 103 - 170
Target Start/End: Original strand, 9443819 - 9443886
Alignment:
Q  103 tgcgtctaggcaattatggtttcttaaaattgcatttatcttcgattttcacaaggaaaaatttctcc 170  Q
    ||||||||| |||||||  ||||||||||||||  |||||||| |||| || | ||||||||||||||    
T  9443819 tgcgtctagacaattatcttttcttaaaattgcccttatcttcaatttccatagggaaaaatttctcc 9443886  T

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