View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20469_low_34 (Length: 359)
Name: NF20469_low_34
Description: NF20469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20469_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 19 - 348
Target Start/End: Complemental strand, 22571473 - 22571144
Alignment:
| Q |
19 |
ataagttgatattcatataaatatttcattattaatgccttgaatacaatcaatagtttaatcataaaagtagtaatatatcatatatgcttaattgttt |
118 |
Q |
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| T |
22571473 |
ataagttgatattcatataaatatttcattattaatgccttgaatacaatcaatagtttaatcataaaagtagtaatatatcatatatgcttaattgctt |
22571374 |
T |
|
| Q |
119 |
acacttgttgtttttctacagcttcttggcactccaactgacgctgatgtggggttagtaaaaaatgacgatgcgagaagatatatccgacaacttcctc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22571373 |
acacttgttgtttttctacagcttcttggcactccaactgacgctgatgtggggttagtaaaaaatgacgatgcgagaagatatatccgacaacttcctc |
22571274 |
T |
|
| Q |
219 |
agtatcctcgtcaacctttgaatagggttttcccccatgttcatcccttagccattgatcttgtcgataaaatgttgacaattgatcctaccagaagaat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22571273 |
agtatcctcgtcaacctttgaatagggttttcccccatgttcatcccttagccattgatcttgtcgataaaatgttgacaattgatcctaccagaagaat |
22571174 |
T |
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| Q |
319 |
tacaggtaattttctcatccttgcattcat |
348 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
22571173 |
tacaggtaattttctcatccttgcattcat |
22571144 |
T |
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