View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20469_low_35 (Length: 344)
Name: NF20469_low_35
Description: NF20469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20469_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 146; Significance: 7e-77; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 176 - 329
Target Start/End: Original strand, 42330025 - 42330178
Alignment:
| Q |
176 |
tatttagttgtctacattgaaatcaagaagaaatctctaaacaaaagttttcaaaactgaaaggtactcaaacctatcttaactaaggaagaaattcacg |
275 |
Q |
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| T |
42330025 |
tatttagttgtctacattgaaatcaagaagaaatctctaaacaaaagttttcaaaactgaaaggtactcaaacctaacttaactaaggaagaaattcacg |
42330124 |
T |
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| Q |
276 |
aaaaatttcgcaaattacatcatcatctgccaattttaggaaggcaagaaaatc |
329 |
Q |
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| T |
42330125 |
aaaaatttcgcaaattacatcgtcatctgccaattttaggaaggcaagaaaatc |
42330178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 42329866 - 42330009
Alignment:
| Q |
1 |
ctaaaattataaccagccttatgctacaagacgccctctaagtacatatattacgacataaattttgtattttctaataaaaagccatatgcatcatatt |
100 |
Q |
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|||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||| |
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| T |
42329866 |
ctaaaattataatcagccttatgctacaagactccctctaagtacatat--tacgacataaattttgtattttctaataaaa-gccaaatgcatcatatt |
42329962 |
T |
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| Q |
101 |
gtattgtaaaaagaaaatgtatacacata-ggataaatgttgaactc |
146 |
Q |
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| T |
42329963 |
gtattgtaaaaagaaaatgtatacacgtagggataaatgttgaactc |
42330009 |
T |
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