View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20469_low_36 (Length: 341)
Name: NF20469_low_36
Description: NF20469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20469_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 10457991 - 10457658
Alignment:
| Q |
1 |
tatatagagctttgttatatactataacaaaaaagcaacatggacatggaaatgga------gatggagatggagaatagtaatagaggaaaccaaataa |
94 |
Q |
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| T |
10457991 |
tatatagagctttgttatatactataacaaaaaagcaacatggacatggaaatggaaatggagatggagatggagaatagtaatagaggaaaccaaataa |
10457892 |
T |
|
| Q |
95 |
aaagtggtagctttaggaagggtagctttagaaagggtagctttagattgggaggaaaagatcacacagtggttgagttaggtagtattgacacacaaaa |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10457891 |
aaagtggtagctttaggaagggtagctttagaaagggtagctttagattgggaggaaaagatcacacagtggttgagttaggtagtattgacacacaaaa |
10457792 |
T |
|
| Q |
195 |
acttctcttagaaggtggtggtggagaaataagagagaaacaaaaaactctcaaaaactctctttctattaagcagatgaaatccctcactgctctttgt |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10457791 |
acttctcttagaaggtggtggtggagaaataagagagaaacaaaaaactctcaaaaactctctttctattaagcagatgaaatccctcactgctctttgt |
10457692 |
T |
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| Q |
295 |
gatactatcttaccttctatcaatgactttgttc |
328 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
10457691 |
gatactatcttaccttctatcaatgactttgttc |
10457658 |
T |
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