View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20469_low_4 (Length: 638)
Name: NF20469_low_4
Description: NF20469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20469_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 568; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 12 - 623
Target Start/End: Original strand, 43984285 - 43984897
Alignment:
| Q |
12 |
agcagagaaatgaccaaaattagtaannnnnnn-gcaccgagagctataataaactatgaagtatggcttaacttacaatacttgtgagtcatgctaatt |
110 |
Q |
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|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43984285 |
agcaaagaaatgaccaaaattagtaattttttttgcaccgagagctataataaactatgaagtatggcttaacttacaatacttgtgagtcatgctaatt |
43984384 |
T |
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| Q |
111 |
agctccaaacacttgattagcacacaagtatacacatgcatgatagtactgctacaatatatgcaacagagttttaccaaatgaactcaattgagttttc |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43984385 |
agctccaaacacttgattagcacacaagtatacacatgcatgatagtactgttacaatatatgcaacagagttttaccaaatgaactcaattgagttttc |
43984484 |
T |
|
| Q |
211 |
ccaatgatcagaaacttccaaccaacttagaattctatacgatacttagatgttcaatcaatgccacaccatttccacatagaattggaacataatttaa |
310 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43984485 |
ccaatgatcagaaacttgcaaccaacttagaattctatacgatacttagatgttcaatcaatgccacaccatttccacatagaattggaacataatttaa |
43984584 |
T |
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| Q |
311 |
cactcctcttttaaataaattcgcttttgtataaatcctatttttaaatagtctcaacaccatcttgaacacattacacatgcattcaaaggaactaaac |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
43984585 |
cactcctcttttaaataaattcgcttttgtataaatcctatttttaaatagtctcaacatcatcttgaacacattacacatgcattcaaaggaactaaac |
43984684 |
T |
|
| Q |
411 |
tttgttaatttgggaaaatatcaaaataaaacaaaaagagaacttgaagtaatctaaactgacttcattcattgatttcacaccactttaattcttaact |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43984685 |
tttgttaatttgggaaaatatcaaaataaaacaaaaagagaacttgaagtaatctaaactgacttcattcattgatttcacaccactttaattcttaact |
43984784 |
T |
|
| Q |
511 |
ataccagatacaaaataatcataagcttccagtgtataatttgaagctcacttattaaaattagctcactagagataaaaatacagagagctaattccac |
610 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43984785 |
ataccagatacaaaataatcataagcttccagtgtataatttgaagctcacttattaaaattagctcactagagataaaaatacagagagctaattccac |
43984884 |
T |
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| Q |
611 |
aaattctcaaatg |
623 |
Q |
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||||||||||||| |
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| T |
43984885 |
aaattctcaaatg |
43984897 |
T |
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