View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20469_low_41 (Length: 312)
Name: NF20469_low_41
Description: NF20469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20469_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 13 - 294
Target Start/End: Original strand, 4031773 - 4032054
Alignment:
| Q |
13 |
gagagcggcaatgaactaaaaataaggaccaccaagagaccttgatatcacatctctactcaaaaatgttagatagcattcatgatgcaaatacatggtt |
112 |
Q |
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| T |
4031773 |
gagagcagcaatgaactaaaaataaggaccaccaagagaccttgatatcacatctctattcaaaaatgttagatagcattcatgatgcaaatacatggtt |
4031872 |
T |
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| Q |
113 |
caaacaatgatcataactaacatcacttgttgcttgccaaaagttaaaccattatataactataatcctaagaattttctaatccaaaacaacaaaattg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4031873 |
caaacaatgatcataactaacatcacttgttgcttgccaaaagttaaaccattatataactataatcctaagaattttctaatccaaaacaacaaaattg |
4031972 |
T |
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| Q |
213 |
gtcatatttttctcccccttttgttattaacaaaaaagttattcaagtaccaaaatacttggtaggggaggaatcatatgat |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
4031973 |
gtcatatttttctcccccttttgttattaacaaaaaagttattcaagtaccaaactacttggtaggggaggaatcatatgat |
4032054 |
T |
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