View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20469_low_46 (Length: 283)

Name: NF20469_low_46
Description: NF20469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20469_low_46
NF20469_low_46
[»] chr7 (8 HSPs)
chr7 (6-147)||(27257288-27257429)
chr7 (6-148)||(40864280-40864424)
chr7 (69-148)||(40863959-40864038)
chr7 (14-147)||(9649844-9649980)
chr7 (83-147)||(11016794-11016858)
chr7 (1-35)||(9010410-9010444)
chr7 (69-117)||(23866854-23866902)
chr7 (5-44)||(19641358-19641397)
[»] chr5 (15 HSPs)
chr5 (6-148)||(21322920-21323062)
chr5 (6-147)||(31732620-31732760)
chr5 (10-150)||(24435061-24435199)
chr5 (6-112)||(13300405-13300511)
chr5 (6-148)||(562535-562678)
chr5 (6-148)||(557763-557908)
chr5 (69-132)||(8041158-8041221)
chr5 (69-130)||(2452088-2452149)
chr5 (6-117)||(41997709-41997822)
chr5 (6-148)||(36941146-36941291)
chr5 (6-147)||(12044014-12044159)
chr5 (6-117)||(32460459-32460572)
chr5 (69-130)||(36949819-36949880)
chr5 (69-147)||(36936393-36936473)
chr5 (6-38)||(36936505-36936537)
[»] chr4 (7 HSPs)
chr4 (6-147)||(3992653-3992794)
chr4 (11-148)||(7899837-7899973)
chr4 (6-148)||(34561476-34561618)
chr4 (6-132)||(41817854-41817980)
chr4 (14-147)||(13520869-13521005)
chr4 (6-40)||(39320633-39320667)
chr4 (6-146)||(31297409-31297552)
[»] chr2 (6 HSPs)
chr2 (6-147)||(6296796-6296937)
chr2 (10-127)||(28856159-28856276)
chr2 (69-132)||(17329278-17329341)
chr2 (6-148)||(10159600-10159744)
chr2 (6-60)||(30659211-30659264)
chr2 (6-35)||(19588682-19588711)
[»] scaffold0041 (1 HSPs)
scaffold0041 (6-147)||(34605-34746)
[»] scaffold0070 (2 HSPs)
scaffold0070 (6-148)||(59477-59618)
scaffold0070 (6-148)||(63679-63820)
[»] chr3 (11 HSPs)
chr3 (6-147)||(10585066-10585206)
chr3 (6-148)||(8070746-8070889)
chr3 (80-148)||(45903238-45903306)
chr3 (70-148)||(632069-632147)
chr3 (6-151)||(3034711-3034859)
chr3 (6-117)||(8884237-8884350)
chr3 (6-148)||(3673633-3673778)
chr3 (6-117)||(8888983-8889096)
chr3 (6-148)||(3693687-3693832)
chr3 (9-89)||(45903518-45903598)
chr3 (6-36)||(632003-632033)
[»] chr8 (10 HSPs)
chr8 (6-148)||(8330261-8330403)
chr8 (6-147)||(37772785-37772928)
chr8 (10-129)||(25361624-25361742)
chr8 (6-147)||(34817620-34817763)
chr8 (26-148)||(21959473-21959595)
chr8 (6-117)||(43301658-43301771)
chr8 (6-147)||(31448747-31448892)
chr8 (6-148)||(4241962-4242107)
chr8 (6-147)||(4237224-4237368)
chr8 (103-148)||(25361577-25361622)
[»] chr6 (1 HSPs)
chr6 (8-147)||(6111615-6111755)
[»] scaffold0060 (2 HSPs)
scaffold0060 (6-148)||(51795-51937)
scaffold0060 (6-147)||(46857-46994)
[»] scaffold0061 (1 HSPs)
scaffold0061 (19-148)||(48841-48970)
[»] scaffold0017 (1 HSPs)
scaffold0017 (19-148)||(149664-149793)
[»] chr1 (4 HSPs)
chr1 (6-147)||(41096835-41096974)
chr1 (6-149)||(33055850-33055993)
chr1 (6-151)||(3095156-3095304)
chr1 (6-98)||(40232321-40232414)
[»] scaffold0484 (2 HSPs)
scaffold0484 (10-129)||(7988-8106)
scaffold0484 (103-148)||(8108-8153)
[»] scaffold0015 (1 HSPs)
scaffold0015 (26-148)||(213253-213375)
[»] scaffold0182 (1 HSPs)
scaffold0182 (6-147)||(8764-8909)
[»] scaffold0045 (1 HSPs)
scaffold0045 (6-117)||(83975-84088)
[»] scaffold0628 (1 HSPs)
scaffold0628 (69-148)||(5798-5878)


Alignment Details
Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 6 - 147
Target Start/End: Original strand, 27257288 - 27257429
Alignment:
Q  6 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccgnnnnnnncaattcacactacactagttctacccattatggaaat 105  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||        ||||||||||||||||||||||||||||| ||| |||    
T  27257288 acacccccactatataaacactactaatgtgtgatccatctgatgtgggacttccacttttttcaattcacactacactagttctacccattgtgggaat 27257387  T
Q  106 ttgtgtttagtcaattactcaatttcctcgtatgttccaaca 147  Q
    ||||||||||||||||||||||||||| | ||||||||||||    
T  27257388 ttgtgtttagtcaattactcaatttccacatatgttccaaca 27257429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 6 - 148
Target Start/End: Complemental strand, 40864424 - 40864280
Alignment:
Q  6 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccgnnnnnnn--caattcacactacactagttctacccattatggaa 103  Q
    ||||| ||||||||||||||||||||||||||||| |||| ||| | ||||||||          ||||||||||||||||||||||||||||| ||| |    
T  40864424 acacctccactatataaacactactaatgtgtgatccatccgatctgggacttccatttttttttcaattcacactacactagttctacccattgtggga 40864325  T
Q  104 atttgtgtttagtcaattactcaatttcctcgtatgttccaacaa 148  Q
    ||||||||||||||||||||||||||||| | |||||||||||||    
T  40864324 atttgtgtttagtcaattactcaatttccacatatgttccaacaa 40864280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 69 - 148
Target Start/End: Complemental strand, 40864038 - 40863959
Alignment:
Q  69 caattcacactacactagttctacccattatggaaatttgtgtttagtcaattactcaatttcctcgtatgttccaacaa 148  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| | |||||||||||||    
T  40864038 caattcacactacactagttctacccattgtgggaatttgtgtttagtcaattactcaatttccacatatgttccaacaa 40863959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 147
Target Start/End: Complemental strand, 9649980 - 9649844
Alignment:
Q  14 actatataaacactactaatgtgtga--ttcatctgatgtaggacttccgnnnnnnncaattcacactacactagttctacccattatggaaatttgtgt 111  Q
    |||||||||||||||||||||||||   |||||| ||||| | ||||||        |||||||||| ||||||||||||||||  |||| |||||||||    
T  9649980 actatataaacactactaatgtgtgtatttcatccgatgtggaacttccacttttttcaattcacacaacactagttctacccaacatgggaatttgtgt 9649881  T
Q  112 ttagtcaatt-actcaatttcctcgtatgttccaaca 147  Q
    ||||||  || ||||||||||| |  |||||||||||    
T  9649880 ttagtcttttaactcaatttccacacatgttccaaca 9649844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 83 - 147
Target Start/End: Complemental strand, 11016858 - 11016794
Alignment:
Q  83 ctagttctacccattatggaaatttgtgtttagtcaattactcaatttcctcgtatgttccaaca 147  Q
    ||||||||||| ||||||| ||||||| |||||||||||||||||||||| |  |||||||||||    
T  11016858 ctagttctacctattatgggaatttgtatttagtcaattactcaatttccacacatgttccaaca 11016794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 9010410 - 9010444
Alignment:
Q  1 tcatcacacccccactatataaacactactaatgt 35  Q
    |||||||||||||||||||||||||||||||||||    
T  9010410 tcatcacacccccactatataaacactactaatgt 9010444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 117
Target Start/End: Original strand, 23866854 - 23866902
Alignment:
Q  69 caattcacactacactagttctacccattatggaaatttgtgtttagtc 117  Q
    |||||||||| ||||||||||||||||  |||| |||||||||||||||    
T  23866854 caattcacacaacactagttctacccaacatgggaatttgtgtttagtc 23866902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 19641358 - 19641397
Alignment:
Q  5 cacacccccactatataaacactactaatgtgtgattcat 44  Q
    ||||||||| ||||||||||||||||||| ||||||||||    
T  19641358 cacacccccgctatataaacactactaatatgtgattcat 19641397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 2e-43; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 6 - 148
Target Start/End: Complemental strand, 21323062 - 21322920
Alignment:
Q  6 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccgnnnnnnncaattcacactacactagttctacccattatggaaat 105  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||        ||||||||||||||||||||||||||||| ||| |||    
T  21323062 acacccccactatataaacactactaatgtgtgatccatccgatgtgggacttccacttttttcaattcacactacactagttctacccattgtgggaat 21322963  T
Q  106 ttgtgtttagtcaattactcaatttcctcgtatgttccaacaa 148  Q
    ||||||||||||||||||||||||||| | |||||||||||||    
T  21322962 ttgtgtttagtcaattactcaatttccacatatgttccaacaa 21322920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 6 - 147
Target Start/End: Original strand, 31732620 - 31732760
Alignment:
Q  6 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccgnnnnnnncaattcacactacactagttctacccattatggaaat 105  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||        ||||||||||||||||||||||| ||||| ||| |||    
T  31732620 acacccccactatataaacactactaatgtgtgatccatc-gatgtgggacttccatttttttcaattcacactacactagttctatccattgtgggaat 31732718  T
Q  106 ttgtgtttagtcaattactcaatttcctcgtatgttccaaca 147  Q
    ||||||||||||||||||||||||||| | ||||||||||||    
T  31732719 ttgtgtttagtcaattactcaatttccacatatgttccaaca 31732760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 10 - 150
Target Start/End: Complemental strand, 24435199 - 24435061
Alignment:
Q  10 ccccactatataaacactactaatgtgtgattcatctgatgtaggacttccgnnnnnnncaattcacactacactagttctacccattatggaaatttgt 109  Q
    ||||| ||||||||||||||||||||||||| |||  || ||  |||||||        ||||||||||||||||||||||||||||| ||| |||||||    
T  24435199 ccccattatataaacactactaatgtgtgatccattcgaagtgagacttcc--ttttttcaattcacactacactagttctacccattgtgggaatttgt 24435102  T
Q  110 gtttagtcaattactcaatttcctcgtatgttccaacaaaa 150  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  24435101 gtttagtcaattactcaatttccacatatgttccaacaaaa 24435061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 6 - 112
Target Start/End: Complemental strand, 13300511 - 13300405
Alignment:
Q  6 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccgnnnnnnncaattcacactacactagttctacccattatggaaat 105  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||        ||||||||||||||||||||||||||||| ||| |||    
T  13300511 acacccccactatataaacactactaatgtgtgatccatctgatgtgggacttccacttttttcaattcacactacactagttctacccattgtgggaat 13300412  T
Q  106 ttgtgtt 112  Q
    |||||||    
T  13300411 ttgtgtt 13300405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 6 - 148
Target Start/End: Original strand, 562535 - 562678
Alignment:
Q  6 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccgnnnnnnncaattcacactacactagttctacccattatggaaat 105  Q
    ||||||||||||||||||||||||||||||||| | |||| ||||| ||||||||        |||||||||| ||||||||||||||||  |||| |||    
T  562535 acacccccactatataaacactactaatgtgtgttccatccgatgtgggacttcc-actttttcaattcacacaacactagttctacccaacatgggaat 562633  T
Q  106 ttgtgtttagtcaatt--actcaatttcctcgtatgttccaacaa 148  Q
    ||||||||||||  ||  ||||||||||| |  ||||||||||||    
T  562634 ttgtgtttagtctttttaactcaatttccacacatgttccaacaa 562678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 148
Target Start/End: Original strand, 557763 - 557908
Alignment:
Q  6 acacccccactatataaacactactaatgtgtgatt--catctgatgtaggacttccgnnnnnnncaattcacactacactagttctacccattatggaa 103  Q
    |||||||||||||||||||||||||||||||||  |  |||| ||||| ||||||||        |||||||||| ||||||||||||||||  |||| |    
T  557763 acacccccactatataaacactactaatgtgtgtgttccatccgatgtgggacttcc-actttttcaattcacacaacactagttctacccaacatggga 557861  T
Q  104 atttgtgtttagtcaatt--actcaatttcctcgtatgttccaacaa 148  Q
    ||||||||||||||  ||  ||||||||||| |  ||||||||||||    
T  557862 atttgtgtttagtctttttaactcaatttccacacatgttccaacaa 557908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 69 - 132
Target Start/End: Complemental strand, 8041221 - 8041158
Alignment:
Q  69 caattcacactacactagttctacccattatggaaatttgtgtttagtcaattactcaatttcc 132  Q
    |||||||||||| ||||||| |||||| ||||||| ||||| ||||||||||||||||||||||    
T  8041221 caattcacactatactagttgtacccactatggaattttgtatttagtcaattactcaatttcc 8041158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 69 - 130
Target Start/End: Original strand, 2452088 - 2452149
Alignment:
Q  69 caattcacactacactagttctacccattatggaaatttgtgtttagtcaattactcaattt 130  Q
    ||||||| |||||| || |||||||| |||||| ||||||||||||||||||||||||||||    
T  2452088 caattcatactacattaattctacccgttatgggaatttgtgtttagtcaattactcaattt 2452149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 6 - 117
Target Start/End: Original strand, 41997709 - 41997822
Alignment:
Q  6 acacccccactatataaacactactaatgtgtgatt--catctgatgtaggacttccgnnnnnnncaattcacactacactagttctacccattatggaa 103  Q
    ||||||||| |||||||||||||||||||||||  |  |||| ||||| ||||||||        |||||||||| ||||||||||||||||  |||| |    
T  41997709 acacccccaatatataaacactactaatgtgtgtgttccatccgatgtgggacttccacttttttcaattcacacaacactagttctacccaacatggga 41997808  T
Q  104 atttgtgtttagtc 117  Q
    ||||||||||||||    
T  41997809 atttgtgtttagtc 41997822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 148
Target Start/End: Complemental strand, 36941291 - 36941146
Alignment:
Q  6 acacccccactatataaacactactaatg--tgtgattcatctgatgtaggacttccgnnnnnnncaattcacactacactagttctacccattatggaa 103  Q
    |||||||||||||||||||||||||||||  |||| | |||| ||||| ||||||||        |||||||||  ||||||||||||||||  |||| |    
T  36941291 acacccccactatataaacactactaatgtgtgtgttccatccgatgtgggacttcc-actttttcaattcacagaacactagttctacccaacatggga 36941193  T
Q  104 atttgtgtttagtcaatt--actcaatttcctcgtatgttccaacaa 148  Q
    ||||||||||||||  ||  ||||||||||| |  ||||||||||||    
T  36941192 atttgtgtttagtctgtttaactcaatttccacacatgttccaacaa 36941146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 147
Target Start/End: Complemental strand, 12044159 - 12044014
Alignment:
Q  6 acacccccactatataaacactactaatgtgtgatt--catctgatgtaggacttccgnnnnnnncaattcacactacactagttctacccattatggaa 103  Q
    |||||||||||||||||||||||||||||||||  |  |||| ||||  |||||| |        |||||||||| ||||||||||||||||  |||| |    
T  12044159 acacccccactatataaacactactaatgtgtgtgttccatccgatgagggactttcacttttttcaattcacacaacactagttctacccaacatggga 12044060  T
Q  104 atttgtgtttagtcaatt--actcaatttcctcgtatgttccaaca 147  Q
    ||||||||||||||  ||  ||||||||||| |  |||||||||||    
T  12044059 atttgtgtttagtctttttaactcaatttccacacatgttccaaca 12044014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 117
Target Start/End: Complemental strand, 32460572 - 32460459
Alignment:
Q  6 acacccccactatataaacactactaatg--tgtgattcatctgatgtaggacttccgnnnnnnncaattcacactacactagttctacccattatggaa 103  Q
    |||||||||||||||||||||||||||||  |||| | |||| ||||| | ||||||        |||||||||| ||||||||||||||||  |||| |    
T  32460572 acacccccactatataaacactactaatgtgtgtgttccatccgatgtggtacttccacttttttcaattcacacaacactagttctacccaacatggga 32460473  T
Q  104 atttgtgtttagtc 117  Q
    ||||||| ||||||    
T  32460472 atttgtgattagtc 32460459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 130
Target Start/End: Original strand, 36949819 - 36949880
Alignment:
Q  69 caattcacactacactagttctacccattatggaaatttgtgtttagtcaattactcaattt 130  Q
    |||||||||||||||||||||  || ||||||  |||||||||||||| |||||||||||||    
T  36949819 caattcacactacactagttccgcctattatgagaatttgtgtttagttaattactcaattt 36949880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 147
Target Start/End: Complemental strand, 36936473 - 36936393
Alignment:
Q  69 caattcacactacactagttctacccattatggaaatttgtgtttagtcaatt--actcaatttcctcgtatgttccaaca 147  Q
    |||||||||| ||||||||||||||||  |||| |||||||||||||||  ||  ||||||||||| |  |||||||||||    
T  36936473 caattcacacaacactagttctacccaacatgggaatttgtgtttagtctgtttaactcaatttccacacatgttccaaca 36936393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 38
Target Start/End: Complemental strand, 36936537 - 36936505
Alignment:
Q  6 acacccccactatataaacactactaatgtgtg 38  Q
    ||||||| |||||||||||||||||||||||||    
T  36936537 acacccctactatataaacactactaatgtgtg 36936505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 6 - 147
Target Start/End: Complemental strand, 3992794 - 3992653
Alignment:
Q  6 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccgnnnnnnncaattcacactacactagttctacccattatggaaat 105  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||        |||||||||| |||||||||||||||||| ||| |||    
T  3992794 acacccccactatataaacactactaatgtgtgatccatccgatgtgggacttccacctttttcaattcacaccacactagttctacccattgtgggaat 3992695  T
Q  106 ttgtgtttagtcaattactcaatttcctcgtatgttccaaca 147  Q
    ||||||||||||||||||||||||||| | ||||||||||||    
T  3992694 ttgtgtttagtcaattactcaatttccgcatatgttccaaca 3992653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 11 - 148
Target Start/End: Complemental strand, 7899973 - 7899837
Alignment:
Q  11 cccactatataaacactactaatgtgtgattcatctgatgtaggacttccgnnnnnnncaattcacactacactagttctacccattatggaaatttgtg 110  Q
    |||||||||||||||||||||||||||||| ||| |||||| ||||||||        |||||||||| |||||||||||||||||| ||| ||||||||    
T  7899973 cccactatataaacactactaatgtgtgatccat-tgatgtgggacttccacttttttcaattcacaccacactagttctacccattgtgggaatttgtg 7899875  T
Q  111 tttagtcaattactcaatttcctcgtatgttccaacaa 148  Q
    |||||||||||||||||||||| | |||||||||||||    
T  7899874 tttagtcaattactcaatttccacatatgttccaacaa 7899837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 6 - 148
Target Start/End: Original strand, 34561476 - 34561618
Alignment:
Q  6 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccgnnnnnnncaattcacactacactagttctacccattatggaaat 105  Q
    |||||||||||||||||| |||||||||||||||| |||| || || ||||||||        |||||||||||| |||| ||||||||||||| | |||    
T  34561476 acacccccactatataaatactactaatgtgtgatccatccgacgtgggacttccacttttttcaattcacactatactaattctacccattataggaat 34561575  T
Q  106 ttgtgtttagtcaattactcaatttcctcgtatgttccaacaa 148  Q
    ||||||||||||||||||||||||||| |  ||||||||||||    
T  34561576 ttgtgtttagtcaattactcaatttccacaaatgttccaacaa 34561618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 6 - 132
Target Start/End: Original strand, 41817854 - 41817980
Alignment:
Q  6 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccgnnnnnnncaattcacactacactagttctacccattatggaaat 105  Q
    |||||||||||||||||||||||||||| |||||| |||| ||||| | ||||||        |||||||||||||| || ||||||||||| | | |||    
T  41817854 acacccccactatataaacactactaatatgtgatccatccgatgtggaacttccacttttttcaattcacactacattaattctacccattgtaggaat 41817953  T
Q  106 ttgtgtttagtcaattactcaatttcc 132  Q
    ||||||||| |||||||||||||||||    
T  41817954 ttgtgtttaatcaattactcaatttcc 41817980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 147
Target Start/End: Complemental strand, 13521005 - 13520869
Alignment:
Q  14 actatataaacactactaatgtgtga--ttcatctgatgtaggacttccgnnnnnnncaattcacactacactagttctacccattatggaaatttgtgt 111  Q
    |||||||||||||||||||||||||   |||||| ||||| | ||||||        |||||||||| ||||||||||||||||  |||| |||||||||    
T  13521005 actatataaacactactaatgtgtgtatttcatccgatgtggaacttccacttttttcaattcacacaacactagttctacccaacatgggaatttgtgt 13520906  T
Q  112 ttagtcaatt-actcaatttcctcgtatgttccaaca 147  Q
    ||||||  || ||||||||||| |  |||||||||||    
T  13520905 ttagtcttttaactcaatttccacacatgttccaaca 13520869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 39320633 - 39320667
Alignment:
Q  6 acacccccactatataaacactactaatgtgtgat 40  Q
    |||||||||||||||||||| ||||||||||||||    
T  39320633 acacccccactatataaacattactaatgtgtgat 39320667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 146
Target Start/End: Complemental strand, 31297552 - 31297409
Alignment:
Q  6 acacccccactatataaacactactaatgtgtgatt--catctgatgtaggacttccgnnnnnnncaattcacactacactagttctacccattatggaa 103  Q
    |||||||||||||||||||| ||| ||||||||  |  |||| ||||||| ||||||        |||||||||| ||||||||||||||||  |||  |    
T  31297552 acacccccactatataaacattacaaatgtgtgtgttccatccgatgtagaacttcc-actttttcaattcacacaacactagttctacccaacatgaga 31297454  T
Q  104 atttgtgtttag--tcaattactcaatttcctcgtatgttccaac 146  Q
    ||||||||||||  |   ||||||||||||| || ||||||||||    
T  31297453 atttgtgtttagccttttttactcaatttccacgcatgttccaac 31297409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 6 - 147
Target Start/End: Complemental strand, 6296937 - 6296796
Alignment:
Q  6 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccgnnnnnnncaattcacactacactagttctacccattatggaaat 105  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||| || |||||        ||||||||||||||||||||||||||||| ||| |||    
T  6296937 acacccccactatataaacactactaatgtgtgatccatccgatgtgggtcttccacttttttcaattcacactacactagttctacccattgtgggaat 6296838  T
Q  106 ttgtgtttagtcaattactcaatttcctcgtatgttccaaca 147  Q
    ||||||||||||||||||||||||||| | ||||||||||||    
T  6296837 ttgtgtttagtcaattactcaatttccacatatgttccaaca 6296796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 10 - 127
Target Start/End: Original strand, 28856159 - 28856276
Alignment:
Q  10 ccccactatataaacactactaatgtgtgattcatctgatgtaggacttccgnnnnnnncaattcacactacactagttctacccattatggaaatttgt 109  Q
    |||||| |||||||||||||||||||||||| |||||||||| ||||||||        |||||||||||||| |||||||||||||| ||  ||||| |    
T  28856159 ccccaccatataaacactactaatgtgtgatccatctgatgtgggacttccacttttttcaattcacactacattagttctacccattgtgtgaatttat 28856258  T
Q  110 gtttagtcaattactcaa 127  Q
    ||||||||||||||||||    
T  28856259 gtttagtcaattactcaa 28856276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 69 - 132
Target Start/End: Original strand, 17329278 - 17329341
Alignment:
Q  69 caattcacactacactagttctacccattatggaaatttgtgtttagtcaattactcaatttcc 132  Q
    ||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  17329278 caattcacattacaatagttctacccattatggaaatttatgtttagtcaattactcaatttcc 17329341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 6 - 148
Target Start/End: Complemental strand, 10159744 - 10159600
Alignment:
Q  6 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccgnnnnnnncaattcacactacactagttctacccattatggaaat 105  Q
    |||||||||||||||||||||||||||| |||| | |||| ||||| ||||||||        |||||||||| |||||||||||||| |  |||| |||    
T  10159744 acacccccactatataaacactactaatatgtgttccatccgatgtgggacttccacttttttcaattcacacaacactagttctacctaacatgggaat 10159645  T
Q  106 ttgtgtttagtcaatt--actcaatttcctcgtatgttccaacaa 148  Q
    ||||||||||||  ||  ||||||||||| |  ||||||||||||    
T  10159644 ttgtgtttagtctttttaactcaatttccacagatgttccaacaa 10159600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 60
Target Start/End: Original strand, 30659211 - 30659264
Alignment:
Q  6 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttcc 60  Q
    |||||||||||||||||||||||||||||| || | |||| ||||| ||||||||    
T  30659211 acacccccactatataaacactactaatgt-tgttccatccgatgtgggacttcc 30659264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Complemental strand, 19588711 - 19588682
Alignment:
Q  6 acacccccactatataaacactactaatgt 35  Q
    ||||||||||||||||||||||||||||||    
T  19588711 acacccccactatataaacactactaatgt 19588682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 6 - 147
Target Start/End: Complemental strand, 34746 - 34605
Alignment:
Q  6 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccgnnnnnnncaattcacactacactagttctacccattatggaaat 105  Q
    ||||||||||||||||||||||| ||||||||||| |||  ||||| ||||||||        ||||||||||||||||||||||||||||| ||| |||    
T  34746 acacccccactatataaacactattaatgtgtgatccatacgatgtgggacttccacttttttcaattcacactacactagttctacccattgtgggaat 34647  T
Q  106 ttgtgtttagtcaattactcaatttcctcgtatgttccaaca 147  Q
    ||||||||||||||||||||||||||| | ||||||||||||    
T  34646 ttgtgtttagtcaattactcaatttccacatatgttccaaca 34605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 6 - 148
Target Start/End: Original strand, 59477 - 59618
Alignment:
Q  6 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccgnnnnnnncaattcacactacactagttctacccattatggaaat 105  Q
    |||||||||||||||||||| |||||||||||||| |||| ||||| ||| ||||        ||||||||||||||||||||||||||||| ||| |||    
T  59477 acacccccactatataaacattactaatgtgtgatccatccgatgtgggatttcc-actttttcaattcacactacactagttctacccattgtgggaat 59575  T
Q  106 ttgtgtttagtcaattactcaatttcctcgtatgttccaacaa 148  Q
    ||||||||||||||||||||||||||| | |||||||||||||    
T  59576 ttgtgtttagtcaattactcaatttccacatatgttccaacaa 59618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 6 - 148
Target Start/End: Original strand, 63679 - 63820
Alignment:
Q  6 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccgnnnnnnncaattcacactacactagttctacccattatggaaat 105  Q
    |||||||||||||||||||| |||||||||||||| |||| ||||| ||| ||||        ||||||||||||||||||||||||||||| ||| |||    
T  63679 acacccccactatataaacattactaatgtgtgatccatccgatgtgggatttcc-actttttcaattcacactacactagttctacccattgtgggaat 63777  T
Q  106 ttgtgtttagtcaattactcaatttcctcgtatgttccaacaa 148  Q
    ||||||||||||||||||||||||||| | |||||||||||||    
T  63778 ttgtgtttagtcaattactcaatttccacatatgttccaacaa 63820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 9e-36; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 6 - 147
Target Start/End: Complemental strand, 10585206 - 10585066
Alignment:
Q  6 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccgnnnnnnncaattcacactacactagttctacccattatggaaat 105  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||        ||||||||||||||||||||||||||||| ||| |||    
T  10585206 acacccccactatataaacactactaatgtgtgatccatccgatgtgggacttcc-actttttcaattcacactacactagttctacccattgtgggaat 10585108  T
Q  106 ttgtgtttagtcaattactcaatttcctcgtatgttccaaca 147  Q
    ||||||||||||||||||||||||| | | |||| |||||||    
T  10585107 ttgtgtttagtcaattactcaattttcacatatgctccaaca 10585066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 6 - 148
Target Start/End: Original strand, 8070746 - 8070889
Alignment:
Q  6 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccgnnnnnnncaattcacactacactagttctacccattatggaaat 105  Q
    ||||||||||||||||||||||||||||||||| | |||| ||||| ||||||||        |||||||||| ||||||||||||||||  |||| |||    
T  8070746 acacccccactatataaacactactaatgtgtgttccatccgatgtgggacttcc-attttttcaattcacacaacactagttctacccaacatgggaat 8070844  T
Q  106 ttgtgtttagtcaatt--actcaatttcctcgtatgttccaacaa 148  Q
    ||||||||||||  ||  ||||||||||| |  ||||||||||||    
T  8070845 ttgtgtttagtctttttaactcaatttccacacatgttccaacaa 8070889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 80 - 148
Target Start/End: Complemental strand, 45903306 - 45903238
Alignment:
Q  80 acactagttctacccattatggaaatttgtgtttagtcaattactcaatttcctcgtatgttccaacaa 148  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||| | |||||||||||||    
T  45903306 acactagttctacccattgtgggaatttgtgtttagtcaattactcaatttccacatatgttccaacaa 45903238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 70 - 148
Target Start/End: Original strand, 632069 - 632147
Alignment:
Q  70 aattcacactacactagttctacccattatggaaatttgtgtttagtcaattactcaatttcctcgtatgttccaacaa 148  Q
    ||||||||||| ||||||| |||||||| || ||||||||||||||||||||||||||||| | | |||||||||||||    
T  632069 aattcacactaaactagttttacccattgtgaaaatttgtgtttagtcaattactcaattttcacatatgttccaacaa 632147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 6 - 151
Target Start/End: Original strand, 3034711 - 3034859
Alignment:
Q  6 acacccccactatataaacactactaatgtgtg-attc-atctgatgtaggacttccgnnnnnnncaattcacactacactagttctacccattatggaa 103  Q
    ||||||||||||||||||||||||||||||||| |||| ||| ||||| ||||||||        |||||||||| ||||||||||||||||  |||| |    
T  3034711 acacccccactatataaacactactaatgtgtgtattccatccgatgtgggacttcc-actttttcaattcacacaacactagttctacccaacatggga 3034809  T
Q  104 atttgtgtttagtcaatt--actcaatttcctcgtatgttccaacaaaaa 151  Q
    ||||||||||||||  ||  ||||||||||| |  |||||||||||||||    
T  3034810 atttgtgtttagtctgtttaactcaatttccacacatgttccaacaaaaa 3034859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 6 - 117
Target Start/End: Original strand, 8884237 - 8884350
Alignment:
Q  6 acacccccactatataaacactactaa--tgtgtgattcatctgatgtaggacttccgnnnnnnncaattcacactacactagttctacccattatggaa 103  Q
    |||||||||||||||||||||||||||  |||||| | |||| ||||| ||||||||        |||||||||| ||||||||||||||||  |||| |    
T  8884237 acacccccactatataaacactactaatgtgtgtgttccatccgatgtgggacttccatttttttcaattcacacaacactagttctacccaacatggga 8884336  T
Q  104 atttgtgtttagtc 117  Q
    ||||||||||||||    
T  8884337 atttgtgtttagtc 8884350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 148
Target Start/End: Original strand, 3673633 - 3673778
Alignment:
Q  6 acacccccactatataaacactactaatgtgtgatt--catctgatgtaggacttccgnnnnnnncaattcacactacactagttctacccattatggaa 103  Q
    |||||||||||||||||||||||||||||||||  |  |||| ||||| ||||||||        |||||||||| ||||||||||||||||  |||| |    
T  3673633 acacccccactatataaacactactaatgtgtgtgttccatccgatgtgggacttcc-actttttcaattcacacaacactagttctacccaacatggga 3673731  T
Q  104 atttgtgtttagtcaatt--actcaatttcctcgtatgttccaacaa 148  Q
    ||||||||||||||  ||  ||||||||||| |  ||||||||||||    
T  3673732 atttgtgtttagtctgtttaactcaatttccacacatgttccaacaa 3673778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 6 - 117
Target Start/End: Original strand, 8888983 - 8889096
Alignment:
Q  6 acacccccactatataaacactactaa--tgtgtgattcatctgatgtaggacttccgnnnnnnncaattcacactacactagttctacccattatggaa 103  Q
    |||||||||||||||||||||||||||  |||||| | |||| ||||| ||||||||        |||||||||| |||||| |||||||||  |||| |    
T  8888983 acacccccactatataaacactactaatgtgtgtgttccatccgatgtgggacttccacttttttcaattcacacaacactaattctacccaacatggga 8889082  T
Q  104 atttgtgtttagtc 117  Q
    ||||||||||||||    
T  8889083 atttgtgtttagtc 8889096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 6 - 148
Target Start/End: Original strand, 3693687 - 3693832
Alignment:
Q  6 acacccccactatataaacactactaa--tgtgtgattcatctgatgtaggacttccgnnnnnnncaattcacactacactagttctacccattatggaa 103  Q
    |||||||||||||||||||||||||||  |||||| | |||| ||||| ||||||||        |||||||||| ||| ||||||||||||  |||  |    
T  3693687 acacccccactatataaacactactaatgtgtgtgttccatccgatgtgggacttcc-actttttcaattcacacaacattagttctacccaacatgaga 3693785  T
Q  104 atttgtgtttagtcaatt--actcaatttcctcgtatgttccaacaa 148  Q
    ||||||||||||||  ||  ||||||||||| |  ||||||||||||    
T  3693786 atttgtgtttagtctgtttaactcaatttccacacatgttccaacaa 3693832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 45903598 - 45903518
Alignment:
Q  9 cccccactatataaacactactaatgtgtgattcatctgatgtaggacttccgnnnnnnncaattcacactacactagttc 89  Q
    ||||||||||||||||||||||||||||||||  ||| |||||  |||||||        |||||||||||||||||||||    
T  45903598 cccccactatataaacactactaatgtgtgatctatccgatgtgagacttccaattttttcaattcacactacactagttc 45903518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 36
Target Start/End: Original strand, 632003 - 632033
Alignment:
Q  6 acacccccactatataaacactactaatgtg 36  Q
    |||||||||||||||||||||||||||||||    
T  632003 acacccccactatataaacactactaatgtg 632033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 6 - 148
Target Start/End: Complemental strand, 8330403 - 8330261
Alignment:
Q  6 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccgnnnnnnncaattcacactacactagttctacccattatggaaat 105  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||||| |||||| |        ||||||||||||  ||||||||||||||| ||| |||    
T  8330403 acacccctactatataaacactactaatgtgtgatccatccgatgtgggactttcacttttttcaattcacactatgctagttctacccattgtgggaat 8330304  T
Q  106 ttgtgtttagtcaattactcaatttcctcgtatgttccaacaa 148  Q
    ||||||||||||||||||||||||||| | |||||||||||||    
T  8330303 ttgtgtttagtcaattactcaatttccacatatgttccaacaa 8330261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 6 - 147
Target Start/End: Original strand, 37772785 - 37772928
Alignment:
Q  6 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccgnnnnnnn---caattcacactacactagttctacccattatgga 102  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||           ||||||||||||||||||||||||||||| |||     
T  37772785 acacccccactatataaacactactaatgtgtgatccatc-gatgtgggacttccattttttttttcaattcacactacactagttctacccattgtggg 37772883  T
Q  103 aatttgtgtttagtcaattactcaatttcctcgtatgttccaaca 147  Q
    |||||||||||||||||||||||||||||| | ||||||||||||    
T  37772884 aatttgtgtttagtcaattactcaatttccacatatgttccaaca 37772928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 10 - 129
Target Start/End: Complemental strand, 25361742 - 25361624
Alignment:
Q  10 ccccactatataaacactactaatgtgtgattcatctgatgtaggacttccgnnnnnnncaattcacactacactagttctacccattatggaaatttgt 109  Q
    |||||||||||||| |||||||||||||||| |||| ||||| ||||||||        ||||||||||||||||||||||||||||||||| |||||||    
T  25361742 ccccactatataaatactactaatgtgtgatccatccgatgtgggacttcc-actttttcaattcacactacactagttctacccattatgggaatttgt 25361644  T
Q  110 gtttagtcaattactcaatt 129  Q
    |||||||| |||||||||||    
T  25361643 gtttagtccattactcaatt 25361624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 6 - 147
Target Start/End: Complemental strand, 34817763 - 34817620
Alignment:
Q  6 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccgnnnnnnn--caattcacactacactagttctacccattatggaa 103  Q
    |||| |||| ||||||||||||||||||||||||| |||| ||||||| ||||||          ||||| ||||||||||||||||| ||||| ||| |    
T  34817763 acactcccaatatataaacactactaatgtgtgatccatccgatgtagaacttccatttttttttcaatttacactacactagttctatccattgtggga 34817664  T
Q  104 atttgtgtttagtcaattactcaatttcctcgtatgttccaaca 147  Q
    ||||||||||| ||||||||||||||| | | ||||||||||||    
T  34817663 atttgtgtttaatcaattactcaattttcacatatgttccaaca 34817620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 26 - 148
Target Start/End: Original strand, 21959473 - 21959595
Alignment:
Q  26 ctactaatgtgtgattcatctgatgtaggacttccgnnnnnnncaattcacactacactagttctacccattatggaaatttgtgtttagtcaattactc 125  Q
    ||||||||||||||| ||| ||||||  |||||||        |||||||||||||| || ||||||||||| ||| |||||||||||||||||||||||    
T  21959473 ctactaatgtgtgatccatttgatgtgagacttccacttttttcaattcacactacattaattctacccattgtgggaatttgtgtttagtcaattactc 21959572  T
Q  126 aatttcctcgtatgttccaacaa 148  Q
    ||||||  | |||||||||||||    
T  21959573 aatttcaacatatgttccaacaa 21959595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 6 - 117
Target Start/End: Complemental strand, 43301771 - 43301658
Alignment:
Q  6 acacccccactatataaacactactaatgt--gtgattcatctgatgtaggacttccgnnnnnnncaattcacactacactagttctacccattatggaa 103  Q
    ||||||||||||||||||||||||||||||  ||| | |||| ||||||||||||||        |||||||||| ||||||||||||||||  ||||||    
T  43301771 acacccccactatataaacactactaatgtatgtgttccatccgatgtaggacttccacttttttcaattcacacaacactagttctacccaagatggaa 43301672  T
Q  104 atttgtgtttagtc 117  Q
    ||||||||||||||    
T  43301671 atttgtgtttagtc 43301658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 6 - 147
Target Start/End: Complemental strand, 31448892 - 31448747
Alignment:
Q  6 acacccccactatataaacactactaatgtgtgatt--catctgatgtaggacttccgnnnnnnncaattcacactacactagttctacccattatggaa 103  Q
    |||||||||||||||||||||||||||||||||  |  |||| ||||| ||||||||        |||||||||| ||||||||||||||||  |||| |    
T  31448892 acacccccactatataaacactactaatgtgtgtgttccatccgatgtgggacttccacttttttcaattcacacaacactagttctacccaacatggga 31448793  T
Q  104 atttgtgtttagtcaatt--actcaatttcctcgtatgttccaaca 147  Q
    ||||||||||||||  ||  ||||||||||| |  |||||||||||    
T  31448792 atttgtgtttagtctttttaactcaatttccacacatgttccaaca 31448747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 148
Target Start/End: Complemental strand, 4242107 - 4241962
Alignment:
Q  6 acacccccactatataaacactactaatgtgtgatt--catctgatgtaggacttccgnnnnnnncaattcacactacactagttctacccattatggaa 103  Q
    |||||||||||||||||||||||||||||||||  |  |||| ||||| ||||||||        |||||||||| ||||||||||||||||  |||| |    
T  4242107 acacccccactatataaacactactaatgtgtgtgttccatccgatgtgggacttcc-actttttcaattcacacaacactagttctacccaacatggga 4242009  T
Q  104 atttgtgtttagtcaatt--actcaatttcctcgtatgttccaacaa 148  Q
    ||||||||||||||  ||  ||||||||||| |  ||||||||||||    
T  4242008 atttgtgtttagtctgtttaactcaatttccacacatgttccaacaa 4241962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 6 - 147
Target Start/End: Complemental strand, 4237368 - 4237224
Alignment:
Q  6 acacccccactatataaacactactaatgtgtgatt--catctgatgtaggacttccgnnnnnnncaattcacactacactagttctacccattatggaa 103  Q
    |||||||||||||||||||||||||||||||||  |  |||| ||||| ||||||||        |||||||||| ||||||||||||||||  |||| |    
T  4237368 acacccccactatataaacactactaatgtgtgtgttccatccgatgtgggacttcc-actttttcaattcacacaacactagttctacccaacatggga 4237270  T
Q  104 atttgtgtttagtcaatt--actcaatttcctcgtatgttccaaca 147  Q
    ||||||||||||||  ||  ||||||||||| |  |||||||||||    
T  4237269 atttgtgtttagtctgtttaactcaatttccacacatgttccaaca 4237224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 148
Target Start/End: Complemental strand, 25361622 - 25361577
Alignment:
Q  103 aatttgtgtttagtcaattactcaatttcctcgtatgttccaacaa 148  Q
    ||||| |||||||||||||||||||||||| | |||||| ||||||    
T  25361622 aatttttgtttagtcaattactcaatttccacatatgttacaacaa 25361577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 8 - 147
Target Start/End: Complemental strand, 6111755 - 6111615
Alignment:
Q  8 acccccactatataaacactactaatgtgtgattcatctgatgtaggacttccgnnnnnnn-caattcacactacactagttctacccattatggaaatt 106  Q
    ||||| |||||||||||||||||||||||| ||||||| ||||| ||| ||||         ||||||||||||||||||||||||||||| ||| ||||    
T  6111755 accccgactatataaacactactaatgtgtaattcatccgatgtgggatttccattttttttcaattcacactacactagttctacccattgtgggaatt 6111656  T
Q  107 tgtgtttagtcaattactcaatttcctcgtatgttccaaca 147  Q
    |||||||||||||||||||||||||| ||||||||| ||||    
T  6111655 tgtgtttagtcaattactcaatttccacgtatgttcaaaca 6111615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 6 - 148
Target Start/End: Complemental strand, 51937 - 51795
Alignment:
Q  6 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccgnnnnnnncaattcacactacactagttctacccattatggaaat 105  Q
    ||||||| ||||||||||||||||||||||||||| |||| || ||  |||||||        ||||||||||||||||| ||||||||||| ||| |||    
T  51937 acacccctactatataaacactactaatgtgtgatccatccgacgtgtgacttccacttttttcaattcacactacactaattctacccattgtgggaat 51838  T
Q  106 ttgtgtttagtcaattactcaatttcctcgtatgttccaacaa 148  Q
    ||||||||||||||||||||||||| | | |||||||||||||    
T  51837 ttgtgtttagtcaattactcaattttcacatatgttccaacaa 51795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 6 - 147
Target Start/End: Complemental strand, 46994 - 46857
Alignment:
Q  6 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccgnnnnnnncaattcacactacactagttctacccattatggaaat 105  Q
    ||||||| ||||||||||||||||||||||    | |||| ||||| ||||||||        ||||||||||||||||||||||||||||| || ||||    
T  46994 acacccctactatataaacactactaatgt----tccatccgatgtgggacttccacttttttcaattcacactacactagttctacccattgtgaaaat 46899  T
Q  106 ttgtgtttagtcaattactcaatttcctcgtatgttccaaca 147  Q
    ||||||||||||||||||||||| ||| | ||||||||||||    
T  46898 ttgtgtttagtcaattactcaatctccacatatgttccaaca 46857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 19 - 148
Target Start/End: Complemental strand, 48970 - 48841
Alignment:
Q  19 ataaacactactaatgtgtgattcatctgatgtaggacttccgnnnnnnncaattcacactacactagttctacccattatggaaatttgtgtttagtca 118  Q
    |||||||||||||||||||||| |||| ||||| ||||||||        |||||||||||||||||||||| |||||| ||||||||||| ||||||||    
T  48970 ataaacactactaatgtgtgatccatccgatgtgggacttccacttttttcaattcacactacactagttcttcccattgtggaaatttgtatttagtca 48871  T
Q  119 attactcaatttcctcgtatgttccaacaa 148  Q
    | |||||||||||| | |||||||||||||    
T  48870 agtactcaatttccacatatgttccaacaa 48841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 19 - 148
Target Start/End: Original strand, 149664 - 149793
Alignment:
Q  19 ataaacactactaatgtgtgattcatctgatgtaggacttccgnnnnnnncaattcacactacactagttctacccattatggaaatttgtgtttagtca 118  Q
    |||||||||||||||||||||| |||| ||||| ||||||||        |||||||||||||||||||||| |||||| ||||||||||| ||||||||    
T  149664 ataaacactactaatgtgtgatccatccgatgtgggacttccacttttttcaattcacactacactagttcttcccattgtggaaatttgtatttagtca 149763  T
Q  119 attactcaatttcctcgtatgttccaacaa 148  Q
    | |||||||||||| | |||||||||||||    
T  149764 agtactcaatttccacatatgttccaacaa 149793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 5e-31; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 6 - 147
Target Start/End: Complemental strand, 41096974 - 41096835
Alignment:
Q  6 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccgnnnnnnncaattcacactacactagttctacccattatggaaat 105  Q
    ||||||||||||||||||||||| ||||||||||| |||  ||||| ||||||||         |||||||||||||||||||||||||||| |||||||    
T  41096974 acacccccactatataaacactaataatgtgtgatccatg-gatgtgggacttccattttttt-aattcacactacactagttctacccattgtggaaat 41096877  T
Q  106 ttgtgtttagtcaattactcaatttcctcgtatgttccaaca 147  Q
    ||||||||||||||||||||||||||  | ||||||||||||    
T  41096876 ttgtgtttagtcaattactcaatttctacatatgttccaaca 41096835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 6 - 149
Target Start/End: Original strand, 33055850 - 33055993
Alignment:
Q  6 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccgnnnnnnncaattcacactacactagttctacccattatggaaat 105  Q
    ||||| ||||||||||||||||||||||||||||| |||| ||||| ||||||||        ||||||||||| |||||| |||||||||| ||| |||    
T  33055850 acacctccactatataaacactactaatgtgtgatccatccgatgtgggacttccatttttttcaattcacactgcactaggtctacccattgtgggaat 33055949  T
Q  106 ttgtgtttagtcaattactcaatttcctcgtatgttccaacaaa 149  Q
    ||||| |||||||||||| |||||| | | ||||||||||||||    
T  33055950 ttgtgcttagtcaattacacaattttcacatatgttccaacaaa 33055993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 6 - 151
Target Start/End: Original strand, 3095156 - 3095304
Alignment:
Q  6 acacccccactatataaacactactaatgtgtga--ttcatctgatgtaggacttccgnnnnnnncaattcacactacactagttctacccattatggaa 103  Q
    |||||||||||||||||||||||||||||||||   |||||| ||||| ||||||||        |||||||||| ||||||||||||||||  ||||||    
T  3095156 acacccccactatataaacactactaatgtgtgtgtttcatccgatgtgggacttcc-actttttcaattcacacaacactagttctacccaacatggaa 3095254  T
Q  104 atttgtgtttagtcaatt--actcaatttcctcgtatgttccaacaaaaa 151  Q
    |||||||||||||   ||  ||||||||||| |  |||||||||||||||    
T  3095255 atttgtgtttagtttgtttaactcaatttccacacatgttccaacaaaaa 3095304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 6 - 98
Target Start/End: Complemental strand, 40232414 - 40232321
Alignment:
Q  6 acacccccactatataaacactact-aatgtgtgattcatctgatgtaggacttccgnnnnnnncaattcacactacactagttctacccatta 98  Q
    ||||||||||||||||||||||||| |||||||||| |||| ||||| ||||||||        |||||||||||||| |||||||||||||||    
T  40232414 acacccccactatataaacactactaaatgtgtgatccatccgatgtgggacttccacttttttcaattcacactacattagttctacccatta 40232321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0484 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: scaffold0484
Description:

Target: scaffold0484; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 10 - 129
Target Start/End: Original strand, 7988 - 8106
Alignment:
Q  10 ccccactatataaacactactaatgtgtgattcatctgatgtaggacttccgnnnnnnncaattcacactacactagttctacccattatggaaatttgt 109  Q
    |||||||||||||| || ||||||||||||| |||| ||||| ||||||||        |||||| |||||||||||||||||||||||||| |||||||    
T  7988 ccccactatataaataccactaatgtgtgatccatccgatgtgggacttcc-actttttcaattctcactacactagttctacccattatgggaatttgt 8086  T
Q  110 gtttagtcaattactcaatt 129  Q
    ||||||||||||||||||||    
T  8087 gtttagtcaattactcaatt 8106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0484; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 148
Target Start/End: Original strand, 8108 - 8153
Alignment:
Q  103 aatttgtgtttagtcaattactcaatttcctcgtatgttccaacaa 148  Q
    ||||| |||||||||||||||||||||||| | |||||| ||||||    
T  8108 aatttttgtttagtcaattactcaatttccacatatgttacaacaa 8153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 26 - 148
Target Start/End: Complemental strand, 213375 - 213253
Alignment:
Q  26 ctactaatgtgtgattcatctgatgtaggacttccgnnnnnnncaattcacactacactagttctacccattatggaaatttgtgtttagtcaattactc 125  Q
    ||||||||||||||| ||| ||||||  |||||||        |||||||||||||| || ||||||||||| ||| |||||||||||||||||||||||    
T  213375 ctactaatgtgtgatccatttgatgtgagacttccacttttttcaattcacactacattaattctacccattgtgggaatttgtgtttagtcaattactc 213276  T
Q  126 aatttcctcgtatgttccaacaa 148  Q
    ||||||  | |||||||||||||    
T  213275 aatttcaacatatgttccaacaa 213253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 6 - 147
Target Start/End: Complemental strand, 8909 - 8764
Alignment:
Q  6 acacccccactatataaacactactaatgtgtgatt--catctgatgtaggacttccgnnnnnnncaattcacactacactagttctacccattatggaa 103  Q
    |||||||||||||||||||||||||||||||||  |  |||| ||||| ||| ||||        |||||||||| ||||||||||||||||  |||| |    
T  8909 acacccccactatataaacactactaatgtgtgtgttccatccgatgtgggatttccacttttttcaattcacacaacactagttctacccaacatggga 8810  T
Q  104 atttgtgtttagtcaatt--actcaatttcctcgtatgttccaaca 147  Q
    ||||||||||||||  ||  ||||||||||| |  |||||||||||    
T  8809 atttgtgtttagtctttttaactcaatttccacacatgttccaaca 8764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 117
Target Start/End: Original strand, 83975 - 84088
Alignment:
Q  6 acacccccactatataaacactactaatgtgtgatt--catctgatgtaggacttccgnnnnnnncaattcacactacactagttctacccattatggaa 103  Q
    ||||| |||||||||||||||||||||||||||  |  |||   ||||||||||| |        |||||||||| ||||||||||||||||  || |||    
T  83975 acacctccactatataaacactactaatgtgtgtgttccattcaatgtaggactttcactcttttcaattcacacaacactagttctacccaacatagaa 84074  T
Q  104 atttgtgtttagtc 117  Q
    ||||||||||||||    
T  84075 atttgtgtttagtc 84088  T

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Target: scaffold0628 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0628
Description:

Target: scaffold0628; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 148
Target Start/End: Original strand, 5798 - 5878
Alignment:
Q  69 caattcacactacactagttctacccattatggaaatttgtgtttagtcaatt-actcaatttcctcgtatgttccaacaa 148  Q
    |||||||||| |||||||||||||| | ||||  ||||||||||||||   || ||||||||||| |  ||||||||||||    
T  5798 caattcacacaacactagttctaccaaatatgagaatttgtgtttagtattttaactcaatttccacacatgttccaacaa 5878  T

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