View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20469_low_49 (Length: 267)
Name: NF20469_low_49
Description: NF20469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20469_low_49 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 5 - 249
Target Start/End: Original strand, 37125193 - 37125432
Alignment:
| Q |
5 |
agaagataaaggacttataaagtattagtcttgcaaataacatgttgaatatagtcattgattaccaacataaaatcatgataaacatcaaatattttca |
104 |
Q |
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| T |
37125193 |
agaagataaatgacttataaaatattcgtcttgcaaataacatgttgaatataatcgttgattaccaacataaaatcatgataaacatcaaatattttca |
37125292 |
T |
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| Q |
105 |
acaaaaagcacatctcttctgttgacccttattagaaaagaagttaactatccaaagtaaacaaccagcaccaatctcaatataagtaccacaacttcta |
204 |
Q |
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| T |
37125293 |
acaaaaagcacatctctt-----gacccttgttagaaaataagttaactatccaaagtaaacaaccagcaccaatctcaatacaagcaccacaacttcta |
37125387 |
T |
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| Q |
205 |
tcaacattaaattaacatattcggttgagcttatccacacacgca |
249 |
Q |
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| T |
37125388 |
tcaacattaaattaacatattcggttgagcttatccacacacgca |
37125432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 121
Target Start/End: Original strand, 24183486 - 24183601
Alignment:
| Q |
5 |
agaagataaaggacttataaagtattagtcttgcaaataacatgttgaatatagtcattgattaccaacataaaatcatgataaacatcaaatattttca |
104 |
Q |
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| T |
24183486 |
agaagatggaggacttctaaagaattcatctcacaaataacctgttgaatagagttgttgattaccaacatcaaaccatgataaaccccaaata-actca |
24183584 |
T |
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| Q |
105 |
acaaaaagcacatctct |
121 |
Q |
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| T |
24183585 |
gcaaaaagcacatctct |
24183601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 91
Target Start/End: Original strand, 36133176 - 36133228
Alignment:
| Q |
39 |
aaataacatgttgaatatagtcattgattaccaacataaaatcatgataaaca |
91 |
Q |
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| T |
36133176 |
aaataacttgttgaatatagttgttgatgaccaacatcaaatcatgataaaca |
36133228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 121
Target Start/End: Original strand, 31653353 - 31653441
Alignment:
| Q |
32 |
gtcttgcaaataacatgttgaatatagtcattgattaccaacataaaatcatgataaacatcaaatattttcaacaaaaagcacatctct |
121 |
Q |
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| T |
31653353 |
gtctcgcaaataactcgttaaatagagttgttgattaccaacatcaaaccatggtaaacaacaaata-gttcaacaaaaagcgcatctct |
31653441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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