View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20469_low_5 (Length: 608)
Name: NF20469_low_5
Description: NF20469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20469_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 212 - 576
Target Start/End: Original strand, 3110098 - 3110463
Alignment:
| Q |
212 |
gagtaattacaagtgagaagcaattatttatttacttt-caagcacgtaacaagaacctctacaaatttactatacatgtgctccttcaaatacatcctt |
310 |
Q |
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| T |
3110098 |
gagtaattacaagtgagaagcaattatttatttacttcacaagcacgtaacaagaacctctacaaatttactatacatgtgctccttcaaatacatcctt |
3110197 |
T |
|
| Q |
311 |
tgcaccttctttcttccattcattcccatttgttctcttgccaatcggttttcaagtaaaaactcaagattttgagcaagaacatgattccctttacgtc |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3110198 |
tgcaccttctttcttccattcattcccatttgttctcttgccaatcggttttcaagtaaaaactcaagattttgagcaagaacatgattccctttacgtc |
3110297 |
T |
|
| Q |
411 |
taataggatgaagaagaccactcacattatgctccacaatttcctttgttcccccaccatctgttcctagaaccggaagaccaaatgccattgcttctat |
510 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3110298 |
taataggatgaagaagaccactcacattatgctccacaatttcctttgtccccccaccatctgttcctagaaccggaagaccaaatgccattgcttctat |
3110397 |
T |
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| Q |
511 |
cgtcacacgtccaaaggtttctcccaatccctgagagttaatcacataaacatcagcagctgagta |
576 |
Q |
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| T |
3110398 |
cgtcacacgtccaaaggtttctcccaatccctgagagttaatgacataaacatcagcagctgagta |
3110463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 218 - 543
Target Start/End: Complemental strand, 26271681 - 26271355
Alignment:
| Q |
218 |
ttacaagtgagaagcaattatttatttactt-tcaagcacgtaacaagaacctctacaaatttactatacatgtgctccttcaaatacatcctttgcacc |
316 |
Q |
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| T |
26271681 |
ttacaagtgagaatcaattatttatttgattctcatgcacctaacaagaacctctacaaatttactatacatgtgctccttcaaatacatcctttgcacc |
26271582 |
T |
|
| Q |
317 |
ttctttcttccattcattcccatttgttctcttgccaatcggttttcaagtaaaaactcaagattttgagcaagaacatgattccctttacgtctaatag |
416 |
Q |
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| T |
26271581 |
ttctttcttccatacattcccatttgttctcttgccaatcggttttcaagtaaaaactcaagattttgagcaaggacatgattccctttacgtctaatag |
26271482 |
T |
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| Q |
417 |
gatgaagaagaccactcacattatgctccacaatttcctttgttcccccaccatctgttcctagaaccggaagaccaaatgccattgcttctatcgtcac |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
26271481 |
gatgaagaagaccactcacattatgctccacaatttcctttgttcccccaccatctgttcctagaaccggaagaccaaatgccattgcttctattgtcac |
26271382 |
T |
|
| Q |
517 |
acgtccaaaggtttctcccaatccctg |
543 |
Q |
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| T |
26271381 |
acgtccaaaggtttctcccaatccctg |
26271355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 540 - 588
Target Start/End: Complemental strand, 26271280 - 26271232
Alignment:
| Q |
540 |
cctgagagttaatcacataaacatcagcagctgagtaaagtgaggcaac |
588 |
Q |
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| T |
26271280 |
cctgagagttaatgacataaacatcagcagctgagtaaagtgaggcaac |
26271232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 540 - 588
Target Start/End: Original strand, 3110494 - 3110542
Alignment:
| Q |
540 |
cctgagagttaatcacataaacatcagcagctgagtaaagtgaggcaac |
588 |
Q |
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| T |
3110494 |
cctgagaattaatgacataaacatcagcagctgagtaaagtgaggcaac |
3110542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 482 - 543
Target Start/End: Complemental strand, 44064266 - 44064205
Alignment:
| Q |
482 |
accggaagaccaaatgccattgcttctatcgtcacacgtccaaaggtttctcccaatccctg |
543 |
Q |
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||||||||||||||||||||||||||||| ||||| |||||||| || ||||| | |||||| |
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| T |
44064266 |
accggaagaccaaatgccattgcttctatagtcacccgtccaaatgtctctccaagtccctg |
44064205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 253 - 484
Target Start/End: Complemental strand, 44065123 - 44064889
Alignment:
| Q |
253 |
gcacgtaacaagaacctctacaaatttactatacatgtgctccttcaaatacatcctttgcaccttctttcttccattcattcccatttgttctcttgcc |
352 |
Q |
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| T |
44065123 |
gcacctaacaataacctcaacaaatttcttatacatgtgttgcttcaaatacatcctctccacctttttcctgccttctatccccatttgcttccttgcc |
44065024 |
T |
|
| Q |
353 |
aatcggttttcaagtaaaaactcaagattttgagcaagaacatgattcc---ctttacgtctaataggatgaagaagaccactcacattatgctccacaa |
449 |
Q |
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| T |
44065023 |
aactggtttttaagtaaatacagaagattctgtgcaaggacatcgttccccgctgcacgtccaattggatgaagaagacctgtaacattgttctcaacta |
44064924 |
T |
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| Q |
450 |
tttcctttgttcccccaccatctgttcctagaacc |
484 |
Q |
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| T |
44064923 |
tctccttcgttcccccagaatctgttccgagaacc |
44064889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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