View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20469_low_50 (Length: 266)
Name: NF20469_low_50
Description: NF20469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20469_low_50 |
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Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 46344185 - 46343925
Alignment:
| Q |
1 |
tcttcacaactcaactttttcaataacaatgaatcttggatgaagttactaaatcagaaaaaagtgatgtagttgaatccttctaggttctaagttctaa |
100 |
Q |
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| T |
46344185 |
tcttcacaactcaactttttcaataacaatgaatcttggatgaagttactaaatcagaaaaaagtgatgtagttgaatccttctaggttctaagttctaa |
46344086 |
T |
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| Q |
101 |
ccctacatattctaaatgcatgttttgaattgtggtagactattttgttaaagcttcaaagtgtaatttttgtaaaatctctggtaattagtgattttgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46344085 |
ccctacatattctaaatgcatgttttgaattgtggtagactattttgttaaagcttcaaagtgtaatttttgtaaaatctctggtaattagtgattttgt |
46343986 |
T |
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| Q |
201 |
caaatagagtcctaacataaacttattgctgtcaactatatcaatcgactttcatctcact |
261 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
46343985 |
caaatagagtcctaacataaacttattgttgtcaactatatcaatcgactttcatgtcact |
46343925 |
T |
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