View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20469_low_52 (Length: 259)
Name: NF20469_low_52
Description: NF20469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20469_low_52 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 15 - 240
Target Start/End: Original strand, 43610741 - 43610966
Alignment:
| Q |
15 |
gagaagaaaggaccagttttcccagcaacttggaatccactgagttttataattgccacaattggttctgtcttcctcttgggcgagccactatgtttag |
114 |
Q |
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| T |
43610741 |
gagaagaaaggaccagttttcccagcaacttggaccccaatgagttttataattgccacaatcggttctgtcttgctcttgggcgagccactatgtttag |
43610840 |
T |
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| Q |
115 |
gaaggtgaggaacaatcataaattactctgaaattatcttaaataatttagggtaaattatgacattaaggagtaatttgttaaaccaaacctctaaact |
214 |
Q |
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| T |
43610841 |
gaaggtgaggaacaatcataaattactctgaaattatcttaaataattaaggataaattatgacattaaggagtaatttgttaaaccaaacctctaaact |
43610940 |
T |
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| Q |
215 |
agtcaaataaattatgttaatctatt |
240 |
Q |
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|||||||||||||||||||||||||| |
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| T |
43610941 |
agtcaaataaattatgttaatctatt |
43610966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 21 - 182
Target Start/End: Original strand, 43617628 - 43617791
Alignment:
| Q |
21 |
aaaggaccagttttcccagcaacttggaatccactgagttttataattgccacaattggttctgtcttcctcttgggcgagccactatgtttaggaaggt |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||| |||| |
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| T |
43617628 |
aaaggaccagttttcccagcaacttggaatccactgagttttataattgccacaattggttctgttttgctcttgggcgagccactgtgtttagggaggt |
43617727 |
T |
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| Q |
121 |
gaggaacaatcataaattactctgaaattatcttaaataatttagggtaa--attatgacatta |
182 |
Q |
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||| || ||||||||| |||||||| ||||| |||||||| ||| ||| |||||||||||| |
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| T |
43617728 |
gagttaccatcataaataactctgaatttatcacaaataattaaggataaatattatgacatta |
43617791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 15 - 123
Target Start/End: Original strand, 43604276 - 43604384
Alignment:
| Q |
15 |
gagaagaaaggaccagttttcccagcaacttggaatccactgagttttataattgccacaattggttctgtcttcctcttgggcgagccactatgtttag |
114 |
Q |
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||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
43604276 |
gagaagagaggaccagttttctcagcaacttggaatccactgagttttataattgccacaattggttctgtcttcctcttgggtgagccactacgtttag |
43604375 |
T |
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| Q |
115 |
gaaggtgag |
123 |
Q |
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| ||||||| |
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| T |
43604376 |
ggaggtgag |
43604384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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