View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20469_low_54 (Length: 250)
Name: NF20469_low_54
Description: NF20469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20469_low_54 |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 55894770 - 55895007
Alignment:
| Q |
13 |
aatatacaaaggggtctaaaagtaaaagacacaaaataacagaaaaaatccaatgtaatctttctacacatcattcctatacttactatggcttaaaggg |
112 |
Q |
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| T |
55894770 |
aatatacaaaggggtctaaaagtaaaagacacaaaataacagaaaaaatccaatgtaatctttctacacatcattcctatacttactatggcttaaaggg |
55894869 |
T |
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| Q |
113 |
tagaagaaccatggccatttgctccattaacaccgtctgaagtcttgttctctgctttcttcctcttcatgcataccatccacgtgtaagcttccaaaag |
212 |
Q |
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| T |
55894870 |
tagaagaaccatggccatttgctccattaacaccatctgaagtcttgttctctgctttcttcctcttcatgcataccatccacgtgtaagcttccaaaag |
55894969 |
T |
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| Q |
213 |
gacagcaatgccccccaaagcaccaataataccaatgt |
250 |
Q |
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| T |
55894970 |
gacagcaatgccccccaaagcaccaataataccaatgt |
55895007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 1030162 - 1029919
Alignment:
| Q |
13 |
aatatacaaaggggtctaaaagtaaaagacacaaaataacagaaaaaatccaatgtaatctttctacacatcattcctatacttactatggct------t |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
1030162 |
aatatacaaaggggtctaaaagtaaaagacacaaaataacagaaaaaatccaatgtaatctttctacacatcattcctatacttactatggctatggctt |
1030063 |
T |
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| Q |
107 |
aaagggtagaagaaccatggccatttgctccattaacaccgtctgaagtcttgttctctgctttcttcctcttcatgcataccatccacgtgtaagcttc |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1030062 |
aaagggtagaagaaccatggccatttgctccattaacaccatctgaagtcttgttatctgctttcttcctcttcatgcataccatccacgtgtaagcttc |
1029963 |
T |
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| Q |
207 |
caaaaggacagcaatgccccccaaagcaccaataataccaatgt |
250 |
Q |
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| T |
1029962 |
caaaaggacagcaatgccccccaaagcaccaataataccaatgt |
1029919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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