View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20469_low_55 (Length: 249)
Name: NF20469_low_55
Description: NF20469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20469_low_55 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 3951356 - 3951116
Alignment:
| Q |
1 |
tgcagagtaaatttttagtattattatacaacggtttctgcataaaagtgtgcaggacattgtatatatggaag---gtcacaaaaaagtttttgtctta |
97 |
Q |
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| T |
3951356 |
tgcagagtaaatttttagtattattatacaacggtttctgcataaaagtgtgcaggacattatatatatggaagaaggtcacaaaaaagtttttgtctta |
3951257 |
T |
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| Q |
98 |
ctttacagctctaacaatatctacaaatatagaactgaaaactataattacatactgtctcgttgataaatcgaaaattttcagcattaattcataacca |
197 |
Q |
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| T |
3951256 |
ctttaaagctctaacaatatctacaaatatagaactgaaaactataattacatactgtctcgttgataaatcgaaaattttcagcattaattcataacca |
3951157 |
T |
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| Q |
198 |
caattttgaaattgataagcagagtatttacagcatatatt |
238 |
Q |
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| T |
3951156 |
caaatttgaaattgataagcagagtatttacagcatatatt |
3951116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 22 - 130
Target Start/End: Original strand, 4027540 - 4027646
Alignment:
| Q |
22 |
tattatacaacggtttctgcataaaagtgtgcaggacattgtatatatggaaggtcacaaaaaagtttttgtcttactttacagctctaacaatatctac |
121 |
Q |
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| T |
4027540 |
tattatacaatgatttctacataa--gtgtgcaggacatagaatataaggaaggtcacaaaaaggttttggtcttacttcacagctcatacaatatctac |
4027637 |
T |
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| Q |
122 |
aaatataga |
130 |
Q |
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| T |
4027638 |
aaatataga |
4027646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 71 - 133
Target Start/End: Original strand, 4013305 - 4013367
Alignment:
| Q |
71 |
gaaggtcacaaaaaagtttttgtcttactttacagctctaacaatatctacaaatatagaact |
133 |
Q |
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| T |
4013305 |
gaaggtaacaaaaatgttttggtcttactctacagctcatacaatatctacaaatatagaact |
4013367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 202 - 238
Target Start/End: Original strand, 13400441 - 13400477
Alignment:
| Q |
202 |
tttgaaattgataagcagagtatttacagcatatatt |
238 |
Q |
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| T |
13400441 |
tttgaaattgataagcagagtatttacagcatatatt |
13400477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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