View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20469_low_64 (Length: 207)
Name: NF20469_low_64
Description: NF20469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20469_low_64 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 42307557 - 42307746
Alignment:
| Q |
1 |
taaaacctatacacaattcatatatatgtttaacattgtaaaattaagcatatgatgcaaaaaggaattaaattacttttttcaacaaatctaatgtcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42307557 |
taaaacctatacacaattcatatatatgtttaacattgtaaaattatgcatatgatgcaaaaaggaattaaattacttttttcaacaaatctaatgtcat |
42307656 |
T |
|
| Q |
101 |
catcatggaaattagaaaaacttaccttttttagttcttctatgtctttaccagatttctcgataatggaacagatcctagcatgtgcat |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42307657 |
catcatggaaattagaaaaacttaccttttttagttcttctatgtctttaccagatttctcgataatggaacagatcctagcatgtgcat |
42307746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 58 - 190
Target Start/End: Complemental strand, 51570711 - 51570582
Alignment:
| Q |
58 |
caaaaaggaattaaattacttttttcaacaaatctaatgtcatcatcatggaaattagaaaaacttaccttttttagttcttctatgtctttaccagatt |
157 |
Q |
| |
|
||||||| |||||||||| |||| ||| || ||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51570711 |
caaaaagcaattaaattaacttttccaataattctaatgtcatca-ca--gaaattagaaaagcttaccttttttagttcttctatgtctttaccagatt |
51570615 |
T |
|
| Q |
158 |
tctcgataatggaacagatcctagcatgtgcat |
190 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| |
|
|
| T |
51570614 |
tcctgataatggaacagatcctagcatgtgcat |
51570582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 92 - 190
Target Start/End: Original strand, 47972330 - 47972427
Alignment:
| Q |
92 |
taatgtcatcatcatggaaattagaaaaacttaccttttttagttcttctatgtctttaccagatttctcgataatggaacagatcctagcatgtgcat |
190 |
Q |
| |
|
|||| ||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
47972330 |
taatatcatcatcacagaaattagaacag-ttaccttttttagttcttctatgtctttaccagatttcctgataatggaacagatcctagcatgtgcat |
47972427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 118 - 190
Target Start/End: Complemental strand, 34033347 - 34033275
Alignment:
| Q |
118 |
aaacttaccttttttagttcttctatgtctttaccagatttctcgataatggaacagatcctagcatgtgcat |
190 |
Q |
| |
|
||||||||||| |||| |||||| ||||||||||| |||||| ||| || ||||| |||||||||||||||| |
|
|
| T |
34033347 |
aaacttaccttctttacttcttcaatgtctttacccgatttcctgatgatagaacaaatcctagcatgtgcat |
34033275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University