View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20469_low_7 (Length: 551)
Name: NF20469_low_7
Description: NF20469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20469_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 237 - 541
Target Start/End: Original strand, 40576822 - 40577119
Alignment:
| Q |
237 |
gttgcagtgaagcaactacttgacagaaatggaattcatcaagggaacatggtattttgattttgagtcttttgcaccgccttaacttggtcaacttagt |
336 |
Q |
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| T |
40576822 |
gttgcagtgaagcaact---tgacagaaatggaattca---agggaacatggtattttgattttgagtcttttgcaccaccttaacttg-tcaacttagt |
40576914 |
T |
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| Q |
337 |
agaattatggatagcaagtttggtgatagttaaaaacacaattgtactagttatgctatatgacaagaatgttaaaaatgaagcattaacttttataatc |
436 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40576915 |
agaattatagatagcaagtttggtgatagttaaaaacacaattgtactagttatgctatatgacaagaatgttaaaaatgaagcattaacttttataatc |
40577014 |
T |
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| Q |
437 |
ctaatgttggaaaaaagatgtaacattaagctacattgagacaaaaatctctcctttgcccggtggccgttggccacagtttttggattaattgtcatct |
536 |
Q |
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| T |
40577015 |
ctattgttggaaaaaagatgtaacattaagctacattgagacaaaaatctctcctttgcccggtggccgttggccacagtttttggattaattgtcatct |
40577114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 40576038 - 40576243
Alignment:
| Q |
1 |
atatcaactttttcacgaatattgaaaagtcttcctctaaatgctgtatcatctcattccttggtgcatgaagaaaagtaagaaaattcaagtaaaagtt |
100 |
Q |
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| T |
40576038 |
atatcaactttttcacgaatattgaaaagtcttcctctaaatgctgtatcatctcattccttggtgcatgaagaaaagtaagaaaattcaagtgaaagtt |
40576137 |
T |
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| Q |
101 |
accttgaaagtcatatttaattagggcctgaaaggtagacaaattgttagccattaagggttattgtatcaatatgacttctccacactttttagtgggt |
200 |
Q |
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| T |
40576138 |
accttgaaagtcatatttaattagtctgtgaaaggtagacaaattgtcagccattaagggttgttatatca--atgtcttctccgcactttttagtgggt |
40576235 |
T |
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| Q |
201 |
taaatata |
208 |
Q |
| |
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|||||||| |
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| T |
40576236 |
taaatata |
40576243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 113 - 208
Target Start/End: Original strand, 40568994 - 40569089
Alignment:
| Q |
113 |
atatttaattagggcctgaaaggtagacaaattgttagccattaagggttattgtatcaatatgacttctccacactttttagtgggttaaatata |
208 |
Q |
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| T |
40568994 |
atatttaattagggcgtgaaaggtagacaaattgttagccgttaagggttgttgtatcaatatgacttctccacactttttagtgggttaaatata |
40569089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 292 - 368
Target Start/End: Original strand, 27472500 - 27472575
Alignment:
| Q |
292 |
tttgattttgagtcttttgcaccgccttaacttggtcaacttagtagaattatggatagcaagtttggtgatagtta |
368 |
Q |
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| T |
27472500 |
tttgatttcgagtcttttgcaactccttaacttg-tcaacttagtagaactatagatagcaagtttggtcatagtta |
27472575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 384 - 428
Target Start/End: Original strand, 27472570 - 27472614
Alignment:
| Q |
384 |
tagttatgctatatgacaagaatgttaaaaatgaagcattaactt |
428 |
Q |
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| T |
27472570 |
tagttatcctatatgacaagaatgttaaaattgaagcattaactt |
27472614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 126; Significance: 1e-64; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 363 - 540
Target Start/End: Complemental strand, 22686742 - 22686565
Alignment:
| Q |
363 |
tagttaaaaacacaattgtactagttatgctatatgacaagaatgttaaaaatgaagcattaacttttataatcctaatgttggaaaaaagatgtaacat |
462 |
Q |
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||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||| |
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| T |
22686742 |
tagttaaaaacactattgtactagttatgctatatgacaataatgttaagaatgaagcattaacttttataatcctattgttggaaaagagatgtaacat |
22686643 |
T |
|
| Q |
463 |
taagctacattgagacaaaaatctctcctttgcccggtggccgttggccacagtttttggattaattgtcatctctct |
540 |
Q |
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||| |||||||||||||||||||||||||||||| ||||||| | ||||||| |||||||| |||||| |||||||| |
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| T |
22686642 |
taatctacattgagacaaaaatctctcctttgccgggtggccagtagccacaggttttggatcaattgttatctctct |
22686565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 225 - 371
Target Start/End: Complemental strand, 22687169 - 22687036
Alignment:
| Q |
225 |
gcattgcaggttgttgcagtgaagcaactacttgacagaaatggaattcatcaagggaacatggtattttgattttgagtcttttgcaccgccttaactt |
324 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||| | || |||||||||||||||||||||||||||||||| || | |
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| T |
22687169 |
gcattgcaggttgttgcagtgaagcaact---tgacagaaatggaattca--agggaaacatggtattttgattttgagtcttttgcac------aa--t |
22687083 |
T |
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| Q |
325 |
ggtcaacttagtagaattatggatagcaagtttggtgatagttaaaa |
371 |
Q |
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| T |
22687082 |
tgtcaacttagtagaattatagatagcaagtttggtgatagttaaaa |
22687036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 414
Target Start/End: Original strand, 19860097 - 19860185
Alignment:
| Q |
327 |
tcaacttagtagaattatggatagcaagttt-ggtgatagttaaaaacacaattgtactagttatgctatatgacaagaatgttaaaaa |
414 |
Q |
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|||||||||||||||||| ||| | ||| || |||| ||||| |||||| |||| |||| |||| ||||||| ||| |||||||||||| |
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| T |
19860097 |
tcaacttagtagaattatagattgaaaggttaggtggtagttgaaaacataattatacttgttaagctatatcacaggaatgttaaaaa |
19860185 |
T |
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