View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20469_low_9 (Length: 538)
Name: NF20469_low_9
Description: NF20469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20469_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 437; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 18 - 527
Target Start/End: Complemental strand, 32187269 - 32186758
Alignment:
| Q |
18 |
acatgcatgcacacacacaatattctatttttataaagttccaaagatacttcagt-caaatggtatagtattttcacaatgaaaaaa--tatctagata |
114 |
Q |
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| T |
32187269 |
acatgcatgcatacacacaatattctatttgtataaagttccaaagatacttcagttcaaatggtatagtattttcacaatgaaaaaaaatatctagata |
32187170 |
T |
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| Q |
115 |
tagatatttttaggaaagggtctaaagtaa-gccctaaattatttcttgttgcccctattatcgccgcaacacaaaaactcttgttgccctaaaatagac |
213 |
Q |
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| T |
32187169 |
tagatatttttaggaaagggtctaaagtaaagccctaaattatttcttgttgcccctattatcgccgcaacacaaaaactcttgttgccctaaaatagac |
32187070 |
T |
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| Q |
214 |
tagtccatttatgcaaatagtgttttgattttagccatgaaagcatgcaagttgatatttgaagccagatttttcattgaactgaaaatatccttacaag |
313 |
Q |
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| T |
32187069 |
tagtccatttatgcaaatagtgttttgattttagccatgaaagcatgcaagttgatatttgaagccagatttttcattgaactgaaaatatccttacaag |
32186970 |
T |
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| Q |
314 |
atttttgtaagttgttgtcatcatctaaaattttcgttgttatttcaacnnnnnnnattagtggttatagtaatcaactactatatttcacaaatgacgt |
413 |
Q |
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| T |
32186969 |
atttttgtaagttgttgtcatcatctaaaattttcgttgttatttcatc-ttttttattagtggttatagtaatcaactactatatttcacaaatgacgt |
32186871 |
T |
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| Q |
414 |
gtttagggtgaagaagagtttcatatgatgtactagtggatcaatatttgaggataattggaaactcttaacaataattgatgtcactaatcataagtag |
513 |
Q |
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| T |
32186870 |
gtttagggtgaagaagagtttcatatgatgtactagtggatcaatatttgaggataattggaaactc-taaaaataattgatgtcactaatcataagtag |
32186772 |
T |
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| Q |
514 |
cttatagtattcat |
527 |
Q |
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| T |
32186771 |
cttatagtattcat |
32186758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 244 - 334
Target Start/End: Complemental strand, 32186412 - 32186322
Alignment:
| Q |
244 |
ttagccatgaaagcatgcaagttgatatttgaagccagatttttcattgaactgaaaatatccttacaagatttttgtaagttgttgtcat |
334 |
Q |
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|||| |||||||||||| |||||||||||| || ||||| ||| ||||||| |||||||||||| ||||| |||||||||||||||||| |
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| T |
32186412 |
ttagtcatgaaagcatggaagttgatatttttagacagatatttatttgaacttaaaatatccttaaaagatctttgtaagttgttgtcat |
32186322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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