View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2046_high_1 (Length: 787)
Name: NF2046_high_1
Description: NF2046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2046_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 503; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 18 - 573
Target Start/End: Original strand, 43090434 - 43090992
Alignment:
| Q |
18 |
aaaaactacattacatgacaaaaacacacctctggaacatggggtgaagcatggaaagcaaaatcaaacaacattaaaataatgaagtatataatgtata |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
43090434 |
aaaaactacattacatgacaaaaacacacctctggaacatggggtgaagcatggaaagcaaaatcaaacaacattaaaataatgaagtatataatatata |
43090533 |
T |
|
| Q |
118 |
gagtgtgacattgcattgtggggctttatacattacacacatgaacaacttacaaagtaacaaaccatgttatgttactattaaacaaatagaannnnnn |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43090534 |
gagtgtgacattgcattgtggggctttatacattacacacatgaacaacttacaaagtaacaaaccatgttatgttactattaaacaaatagaattttt- |
43090632 |
T |
|
| Q |
218 |
natgtagtaaaaaagaatcaccttggaagaatcaaattcttgaaaggtaaagcagttcaaaagttgtaaaagaagaagtggtggaaagtgaaagacccaa |
317 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43090633 |
-atgtagtaaaaaagaaacaccttggaagaatcaaattcttgaaaggtaaagcagttcaaaagttgtaaaagaagaagtggtggaaagtgaaagacccaa |
43090731 |
T |
|
| Q |
318 |
aattgtccatggaactcagaaaaagaagagaagtgaaacagaagaggcccacagtgaaattatatgtatgttcaatgttcattcattcatctgtccctcc |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43090732 |
aattgtccatggaactcagaaaaagaagagaagtgaaacagaagaggcccacagtgaaattatatgtatgttcaatgttcattcattcatctgtccctcc |
43090831 |
T |
|
| Q |
418 |
ctatgagcgacttgtccttaaaaaagatagatac-----ttcagtgtcctaaaatatctgacacactcttgaatgcattcctagttaatcttcccttccc |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
43090832 |
ctatgagcgacttgtccttaaaaaagatagatacttcagttcagtgtcctaaaatatctgacacactcttgaatgcattcctagttaatcttcccatccc |
43090931 |
T |
|
| Q |
513 |
ttatagttataacaaatatatcaacttcttcttctgctaaatttcttcaatgtgtgtgtat |
573 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43090932 |
ttatagttataacaaatatatcaacttcttcttctgctaaatttcttcaatgtgtgtgtat |
43090992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 574 - 768
Target Start/End: Original strand, 43091052 - 43091246
Alignment:
| Q |
574 |
aactccctaaatcaaagaaacagtttgtgattgtgtgactcgtaaaaagaaatcgaataattcatctttctttcttctgaatatggttctgttactttta |
673 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43091052 |
aactccctaaatcaaagaaaaagtttgtgattgtgtgactcgtaaaaagaaatcgaataattcatctttctttcttctgaatatggttctgttactttta |
43091151 |
T |
|
| Q |
674 |
tgcattaaagctgaaccaataaaagatagctttttagatgaatcaacattgttcctttttccatctccaacaccctactactacctaatacatac |
768 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43091152 |
tgcattaaagctgaaccaataaaagatagctttttagatgaatcaacattgttcctttttccatctccaacaccctactactacctaatacatac |
43091246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University