View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2046_high_10 (Length: 321)
Name: NF2046_high_10
Description: NF2046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2046_high_10 |
 | |
|
| [»] scaffold0378 (1 HSPs) |
| | |
|
| [»] scaffold0049 (1 HSPs) |
| | |
|
| [»] scaffold0176 (1 HSPs) |
| | |
|
| [»] scaffold0512 (1 HSPs) |
| | |
|
| [»] scaffold0021 (1 HSPs) |
| | |
|
| [»] scaffold0329 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 16952831 - 16952524
Alignment:
| Q |
1 |
gagctttattccgagaatgttcttgaaaaaatatttgtttgctttaagcctatctttaataacactcaagaacacatgttaaataacaaatgatctcaga |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
16952831 |
gagctttgttccgagaatgttcttgaaaaaatatttgtttgttttaagcctatctttaataacactctaaaacacatgttaaataacaaatgatctcaga |
16952732 |
T |
|
| Q |
101 |
attcttttaatataatttaaatgttttgttatcattaaaacaatttaaaaagagattcttggaatttatctcaacaatgaagggtcttgaccattatatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16952731 |
attcttttaatataatttaaatgttttgttatcattaaaacaatttaaaaagagattcttggaatttatctcaacaatgaagggtcttgaccattatatt |
16952632 |
T |
|
| Q |
201 |
aaacatatgacattgtctgaacaaatttcttaagcattaattgaaccattgtcaaccttgaacaatgcacatggtgattcatccaactccgcactaatga |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
16952631 |
aaacatatgacattgtctgaacaaatttcttaagcattaattgaaccattgtcaaccttgaacaatgcatatggtgattcatccaactccgcactaatga |
16952532 |
T |
|
| Q |
301 |
tgcatttg |
308 |
Q |
| |
|
|||||||| |
|
|
| T |
16952531 |
tgcatttg |
16952524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 140
Target Start/End: Original strand, 10461000 - 10461077
Alignment:
| Q |
63 |
cactcaagaacacatgttaaataacaaatgatctcagaattcttttaatataatttaaatgttttgttatcattaaaa |
140 |
Q |
| |
|
||||||||| |||| ||||||||| | | || ||| ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
10461000 |
cactcaagagcacaagttaaataaacactaatatcataattcttaaaatataatttaaatgttttgttatcattaaaa |
10461077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0378 (Bit Score: 158; Significance: 5e-84; HSPs: 1)
Name: scaffold0378
Description:
Target: scaffold0378; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 4911 - 5084
Alignment:
| Q |
1 |
gagctttattccgagaatgttcttgaaaaaatatttgtttgctttaagcctatctttaataacactcaagaacacatgttaaataacaaatgatctcaga |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
4911 |
gagctttgttccgagaatgttcttgaaaaaatatttgtttgctttaaacttatctttaataacactcaagaacacatgttaaataacaaataatctcaga |
5010 |
T |
|
| Q |
101 |
attcttttaatataatttaaatgttttgttatcattaaaacaatttaaaaagagattcttggaatttatctcaa |
174 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5011 |
attcttttaatataatttaaatgttttgttatcattaaaacaatttaaaaagagattcttggaatttatctcaa |
5084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 14805203 - 14805027
Alignment:
| Q |
1 |
gagctttattccgagaatgttcttgaaaaaa-tatttgtttgctttaagcctatctttaataacactcaagaacacatgttaaataacaaatgatctcag |
99 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
14805203 |
gagctttgttccgagaatgttcttgaaaaaagtatttgtttgctttaagtctatctttaataacactcaagaacacatgttaaataacaaataatctcag |
14805104 |
T |
|
| Q |
100 |
aattcttttaatataatttaaatgttttgttatcattaaaacaatttaaaaagagattcttggaatttatctcaaca |
176 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14805103 |
aattcttttaatataatttaaatgttttgttatcattaaaacaatttaaaaagagattcttggaatttatctcaaca |
14805027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 49 - 178
Target Start/End: Complemental strand, 21928235 - 21928107
Alignment:
| Q |
49 |
cctatctttaataacactcaagaacacatgttaaataacaaatgatctcagaattcttttaatataatttaaatgttttgttatcattaaaacaatttaa |
148 |
Q |
| |
|
||||||||| | | ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||| | |
|
|
| T |
21928235 |
cctatcttttaaatcactcaagaacacatgttaaataacaaataatctcagaattcatttaatataatttaaatattttgttatcattaaaacaattt-a |
21928137 |
T |
|
| Q |
149 |
aaagagattcttggaatttatctcaacaat |
178 |
Q |
| |
|
|||| |||| || ||||||||||||||||| |
|
|
| T |
21928136 |
aaagggatttttagaatttatctcaacaat |
21928107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0049 (Bit Score: 156; Significance: 7e-83; HSPs: 1)
Name: scaffold0049
Description:
Target: scaffold0049; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 28856 - 28681
Alignment:
| Q |
1 |
gagctttattccgagaatgttcttgaaaaaatatttgtttgctttaagcctatctttaataacactcaagaacacatgttaaataacaaatgatctcaga |
100 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
28856 |
gagctttgttccgagaatgttattgaaaaaatatttgtttgctttaaacttatctttaataacactcaagaacacatgttaaataacaaataatctcaga |
28757 |
T |
|
| Q |
101 |
attcttttaatataatttaaatgttttgttatcattaaaacaatttaaaaagagattcttggaatttatctcaaca |
176 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28756 |
attcttttaatataatttaaatgttttgttatcattaaaacaatttaaaaagagattcttggaatttatctcaaca |
28681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 149; Significance: 1e-78; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 28391136 - 28390960
Alignment:
| Q |
1 |
gagctttattccgagaatgttcttgaaaaaa-tatttgtttgctttaagcctatctttaataacactcaagaacacatgttaaataacaaatgatctcag |
99 |
Q |
| |
|
||||||| ||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
28391136 |
gagctttgttctgagaatgttcttgaaaaaggtatttgtttgctttaaacctatctttaataacactcaagaacacatgttaaataacaaataatctcag |
28391037 |
T |
|
| Q |
100 |
aattcttttaatataatttaaatgttttgttatcattaaaacaatttaaaaagagattcttggaatttatctcaaca |
176 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28391036 |
aattcttttaatataatttaaatgttttgttatcattaaaacaatttaaaaagagattcttggaatttatctcaaca |
28390960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 13 - 176
Target Start/End: Complemental strand, 34142980 - 34142816
Alignment:
| Q |
13 |
gagaatgttcttgaaaaaa-tatttgtttgctttaagcctatctttaataacactcaagaacacatgttaaataacaaatgatctcagaattcttttaat |
111 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
34142980 |
gagaatattcttgaaaaaagtatttgtttgctttaagcctatctttaataacactcaagaaaacatgttaaataacaaataatctcagaattcttttaat |
34142881 |
T |
|
| Q |
112 |
ataatttaaatgttttgttatcattaaaacaatttaaaaagagattcttggaatttatctcaaca |
176 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
34142880 |
ataatttaaatgttttgttatcattaaaacaatttaaaaaaagattcttggaatttatctcaaca |
34142816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 13 - 177
Target Start/End: Original strand, 17219657 - 17219821
Alignment:
| Q |
13 |
gagaatgttcttgaaaaaatatttgtttgcttta-agcctatctttaataa-cactcaagaacacatgttaaataacaaatgatctcagaattcttttaa |
110 |
Q |
| |
|
||||||||||||||||| || ||| ||||||| | ||||||||||| || ||||||||||||||| ||||||||||||| ||| || ||| | ||||| |
|
|
| T |
17219657 |
gagaatgttcttgaaaacat--ttgcttgctttgtaacctatctttaaaaatcactcaagaacacattttaaataacaaataatcccataatccatttaa |
17219754 |
T |
|
| Q |
111 |
tataatttaaatgttttgttatcattaaaacaatttaaaaagagattcttggaatttatctcaacaa |
177 |
Q |
| |
|
||||||||| ||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
17219755 |
tataatttatatgttttgttatcgtcaaaacaatttaaaaagagatttttggaatttatctcaacaa |
17219821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 149; Significance: 1e-78; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 27751426 - 27751602
Alignment:
| Q |
1 |
gagctttattccgagaatgttcttgaaaaaa-tatttgtttgctttaagcctatctttaataacactcaagaacacatgttaaataacaaatgatctcag |
99 |
Q |
| |
|
||||||| ||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
27751426 |
gagctttgttctgagaatgttcttgaaaaaggtatttgtttgctttaaacctatctttaataacactcaagaacacatgttaaataacaaataatctcag |
27751525 |
T |
|
| Q |
100 |
aattcttttaatataatttaaatgttttgttatcattaaaacaatttaaaaagagattcttggaatttatctcaaca |
176 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27751526 |
aattcttttaatataatttaaatgttttgttatcattaaaacaatttaaaaagagattcttggaatttatctcaaca |
27751602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 27742245 - 27742423
Alignment:
| Q |
1 |
gagctttattccgagaatgttcttgaaaaaa-tatttgtttgctttaagcctatctttaataacactcaagaacacatgttaaataacaaatgatctcag |
99 |
Q |
| |
|
||||||| ||| |||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
27742245 |
gagctttgttctgagaatgttcttgaaaaaggtatttgtttgctttaaacttatctttaataacactcaagaacacatgttaaataacaaataatctcag |
27742344 |
T |
|
| Q |
100 |
aattcttttaatataatttaaatgttttgttatcattaaaacaatttaaaaagagattcttggaatttatctcaacaat |
178 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27742345 |
aattcttttaatataatttaaatgttttgttatcattaaaacaatttaaaaagagattcttggaatttatctcaacaat |
27742423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 4891782 - 4891604
Alignment:
| Q |
1 |
gagctttattccgagaatgttcttgaaaaaatatttgtttgctttaagcctatctttaataacactcaagaacacatgttaaataacaaatgatctcaga |
100 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||| || ||||| |
|
|
| T |
4891782 |
gagctttgttccgagaatgttcttaaaaaaatatttgtttgctttaaacctatctttaataacactaaaaaacacatgttaaataacaaataatttcaga |
4891683 |
T |
|
| Q |
101 |
attcttttaatataatttaaatgttttgttatcattaaaacaatttaaaaagagattcttgga-atttatctcaacaat |
178 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||| |
|
|
| T |
4891682 |
attcttttaatataatttaaatgttttgttatcattaaaacaattttaaaagatattcttggatttttatctcaacaat |
4891604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 16209480 - 16209305
Alignment:
| Q |
1 |
gagctttattccgagaatgttcttgaaaaaatatttgtttgcttta-agcctatctttaataacactcaagaacacatgttaaataacaaatgatctcag |
99 |
Q |
| |
|
||||||| ||| ||||||||||||||||| |||||| ||||||| | | ||||||||| | ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
16209480 |
gagctttgttctgagaatgttcttgaaaa--tatttgcttgctttgcaacatatctttaacatcactcaagaacacatgttaaataacaaataatctcag |
16209383 |
T |
|
| Q |
100 |
aattcttttaatataatttaaatgttttgttatcattaaaacaatttaaaaagagattcttggaatttatctcaacaa |
177 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||| | |||| |||| ||||||||||||||||||| |
|
|
| T |
16209382 |
aatttatttaatataatttaaatgttttgttatcattaaaacaattaagaaagggatttttggaatttatctcaacaa |
16209305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 21876911 - 21877081
Alignment:
| Q |
1 |
gagctttattccgagaatgttcttgaaaaaatatttgtttgcttta-agcctatctttaataacactcaagaacacatgttaaataacaaatgatctcag |
99 |
Q |
| |
|
||||||| ||| || |||||||||||||| |||||| ||||||| | ||||||||||| | ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
21876911 |
gagctttgttctgataatgttcttgaaaa--tatttgcttgctttgcaacctatctttaaaatcactcaagaacacatgttaaataacaaataatctcat |
21877008 |
T |
|
| Q |
100 |
aattcttttaatataatttaaatgttttgttatcattaaaacaatttaaaaagaga-ttcttggaatttatctcaaca |
176 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||| || || ||||| |||||||||||| |
|
|
| T |
21877009 |
aattt-----atataatttaaatgttttgttatcattaaaacaatttaaaaagggattttttggagtttatctcaaca |
21877081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176 (Bit Score: 141; Significance: 6e-74; HSPs: 1)
Name: scaffold0176
Description:
Target: scaffold0176; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 13 - 176
Target Start/End: Complemental strand, 3905 - 3741
Alignment:
| Q |
13 |
gagaatgttcttgaaaaaa-tatttgtttgctttaagcctatctttaataacactcaagaacacatgttaaataacaaatgatctcagaattcttttaat |
111 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
3905 |
gagaatattcttgaaaaaagtatttgtttgctttaagcctatctttaataacactcaagaaaacatgttaaataacaaataatctcagaattcttttaat |
3806 |
T |
|
| Q |
112 |
ataatttaaatgttttgttatcattaaaacaatttaaaaagagattcttggaatttatctcaaca |
176 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
3805 |
ataatttaaatgttttgttatcattaaaacaatttaaaaaaagattcttggaatttatctcaaca |
3741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 134; Significance: 1e-69; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 16284789 - 16284613
Alignment:
| Q |
1 |
gagctttattccgagaatgttcttgaaaaaatatttgtttgctttaagcctatctttaataacactcaagaacacatgttaaataacaaatgatctcaga |
100 |
Q |
| |
|
||||||| || ||||||||||||||||||| |||||| ||||||||| ||||| | ||||||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
16284789 |
gagctttgttacgagaatgttcttgaaaaa-tatttgcttgctttaaacctatttgtaataacactcaagaacacatgtcaaataacaaataatctcaga |
16284691 |
T |
|
| Q |
101 |
attcttttaatataatttaaatgttttgttatcattaaaacaatttaaaaagagattcttggaatttatctcaacaat |
178 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16284690 |
attcttttaatataattaaaatgttttgttatcattaaaacaatttaaaaagagattcttggaatttatctcaacaat |
16284613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 108 - 177
Target Start/End: Original strand, 25893616 - 25893685
Alignment:
| Q |
108 |
taatataatttaaatgttttgttatcattaaaacaatttaaaaagagattcttggaatttatctcaacaa |
177 |
Q |
| |
|
||||||||||||| |||||| |||||||||||| ||||||||||| |||| || |||||||||||||||| |
|
|
| T |
25893616 |
taatataatttaattgttttattatcattaaaataatttaaaaagggatttttagaatttatctcaacaa |
25893685 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 49 - 116
Target Start/End: Original strand, 25892326 - 25892393
Alignment:
| Q |
49 |
cctatctttaataacactcaagaacacatgttaaataacaaatgatctcagaattcttttaatataat |
116 |
Q |
| |
|
||||||||||| | ||||||| ||||||||||||||||||||| |||||| ||||| ||||||||||| |
|
|
| T |
25892326 |
cctatctttaaaatcactcaaaaacacatgttaaataacaaataatctcaaaattcatttaatataat |
25892393 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 29862875 - 29862703
Alignment:
| Q |
1 |
gagctttattccgagaatgttcttgaaaaaatatttgtttgctttaagcctatctttaataacactcaagaacacatgttaaataacaaatgatctcaga |
100 |
Q |
| |
|
||||||| ||| |||||||||||||||||| |||| | ||| || || ||| |||||||||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
29862875 |
gagctttgttctgagaatgttcttgaaaaa-tatt-gcttgtttaaaacctgtctttaataacactcaagaatacatgttaaataacaaataatctcaga |
29862778 |
T |
|
| Q |
101 |
attcttttaatataatttaaatgttttgttatcattaaaacaatttaaaaagagattcttggaatttatctcaaca |
176 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
29862777 |
gttcttttaatataatttaaatgttttgttatcattaaaacaa-ttaaaaagagattcttggaatttatgtcaaca |
29862703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 33239632 - 33239536
Alignment:
| Q |
1 |
gagctttattccgagaatgttcttgaaaaaatatttgtttgctttaagcctatctttaataacactcaagaacacatgttaaataacaaatgatctca |
98 |
Q |
| |
|
||||||| || ||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
33239632 |
gagctttgttacgagaatgttcttgaaaaa-tatttgcttgctttaaacctatctttaataacactcaagaacacatgtcaaataacaaataatctca |
33239536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0512 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: scaffold0512
Description:
Target: scaffold0512; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 7284 - 7457
Alignment:
| Q |
1 |
gagctttattccgagaatgttcttgaaaaaatatttgtttgcttta-agcctatctttaataacactcaagaacacatgttaaataacaaatgatctcag |
99 |
Q |
| |
|
||||||| ||| |||||||||||||||||| |||||| ||||||| | ||||||||||| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
7284 |
gagctttgttctgagaatgttcttgaaaaa-tatttgcttgctttgtaacctatctttaagaacactcaagaacacatgttaaataacaaataatctcat |
7382 |
T |
|
| Q |
100 |
aattcttttaatataatttaaatgttttgttatcattaaaacaatttaaaaagagattcttggaatttatctcaaca |
176 |
Q |
| |
|
||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
7383 |
aat-catttaatataatttaaatgttttgttatcattaaaacaattt-aaaagagatttttggaatttatctcaaca |
7457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 13 - 177
Target Start/End: Original strand, 25511696 - 25511859
Alignment:
| Q |
13 |
gagaatgttcttgaaaaaatatttgtttgcttta-agcctatctttaataa-cactcaagaacacatgttaaataacaaatgatctcagaattcttttaa |
110 |
Q |
| |
|
||||||||||||||||| || ||| ||||||| | ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
25511696 |
gagaatgttcttgaaaacat--ttgcttgctttgtaacctatctttaatattcactcaagaacacatgttaaataacaaataatctcagaattctcttaa |
25511793 |
T |
|
| Q |
111 |
tataatttaaatgttttgttatcattaaaacaatttaaaaagagattcttggaatttatctcaacaa |
177 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| ||||| |||| ||||||||||||||||||| |
|
|
| T |
25511794 |
tataatttaaatattttgttatcattaaaacaattt-aaaagggatttttggaatttatctcaacaa |
25511859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 63 - 178
Target Start/End: Original strand, 5151947 - 5152063
Alignment:
| Q |
63 |
cactcaagaacacatgttaaataa---caaatgatctcagaattcttttaatataatttaaatgttttgttatcattaaaacaatttaaaaagagattct |
159 |
Q |
| |
|
|||||||||||| ||||||||||| ||||| |||||| || || || ||||| ||||||||||| |||| ||||||||||||| |||| |||| | |
|
|
| T |
5151947 |
cactcaagaacaaatgttaaataattacaaataatctcataaatcattaaatatggtttaaatgtttagttaccattaaaacaatt--gaaagggatttt |
5152044 |
T |
|
| Q |
160 |
tggaatttatctcaacaat |
178 |
Q |
| |
|
| |||||||| |||||||| |
|
|
| T |
5152045 |
tcgaatttatgtcaacaat |
5152063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0021 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 162923 - 162749
Alignment:
| Q |
1 |
gagctttattccgagaatgttcttgaaaaaatatttgtttgcttta-agcctatctttaataacactcaagaacacatgttaaataacaaatgatctcag |
99 |
Q |
| |
|
||||||| ||| ||||||||||||||||| | |||| ||| ||| | ||||||||| | | ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
162923 |
gagctttgttctgagaatgttcttgaaaa--tgtttgcttgttttttaacctatcttttaaatcactcaagaacacatgttaaataacaaataatctcag |
162826 |
T |
|
| Q |
100 |
aattcttttaatataatttaaatgttttgttatcattaaaacaatttaaaaagagattcttggaatttatctcaacaa |
177 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||| |
|
|
| T |
162825 |
aattcatttaatataatttaaatgttttgttatcattaaaacaattt-taaagggatttttggaatttatctcaacaa |
162749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0329 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0329
Description:
Target: scaffold0329; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 891 - 714
Alignment:
| Q |
1 |
gagctttattccgagaatgttcttgaaaaaatatttgtttgcttta-agcctatctt-taataacactcaagaacacatgttaaataacaaatgatctca |
98 |
Q |
| |
|
||||||| ||| ||||||||||||||||| | ||| ||||||| | |||||||| ||| | |||||||||| |||||||||||||||||| || ||| |
|
|
| T |
891 |
gagctttgttctgagaatgttcttgaaaacaa--ttgattgctttgtaacctatcttataaaatcactcaagaaaacatgttaaataacaaataatatca |
794 |
T |
|
| Q |
99 |
gaattcttttaatataatttaaatgttttgttatcattaaaacaatttaaaaagagattcttggaatttatctcaacaat |
178 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||||||||||||| ||||| | | |||||||||||||||||||| |
|
|
| T |
793 |
taattcatttaatataatttaaatattttgttatcattaaaacaatttcaaaaggaacttttggaatttatctcaacaat |
714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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