View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2046_high_12 (Length: 298)
Name: NF2046_high_12
Description: NF2046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2046_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 12 - 284
Target Start/End: Complemental strand, 7297476 - 7297204
Alignment:
| Q |
12 |
aatactattttcttctacctaaaaaatgtagttgtccaacaccaacaaagtttgatcacatacaatccttttatgtgaggcctaatttgttgcttcaatt |
111 |
Q |
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| T |
7297476 |
aatactattttcttctacctaaaaaatgtagttgtccaacaccaacaaagtttgatcacatacaatccttttatgtgaggcctaatttgttgcttcaatt |
7297377 |
T |
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| Q |
112 |
ggacttcaatttgttagtatctgcattatttcgtgcacctaagacaagagagcaatcaccaacaatctcattcttcttctttttgccattagcccttaca |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7297376 |
ggacttcaatttgttagtatctgcattatttcgtgcacctaagacaagagagcaatcaccaacaatctcattcttcttctttttgccattagcccttaca |
7297277 |
T |
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| Q |
212 |
taaaaattaacaaacaacaacaaaataacaccattcaaaatagaattgaaaacccaagcaccaattccattac |
284 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7297276 |
taaaaattaacaaacaacaacaaaataacaccattcaaaatagaattgaaaacccaagcaccaattccattac |
7297204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 284
Target Start/End: Complemental strand, 6665623 - 6665582
Alignment:
| Q |
243 |
cattcaaaatagaattgaaaacccaagcaccaattccattac |
284 |
Q |
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| T |
6665623 |
cattcaaaacagaattgaaaacccaagctccaattccgttac |
6665582 |
T |
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