View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2046_high_13 (Length: 296)
Name: NF2046_high_13
Description: NF2046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2046_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 14 - 279
Target Start/End: Original strand, 20015581 - 20015846
Alignment:
| Q |
14 |
agaaactaaattagcagacttaacatagccactaatcaaattagaataaaaacatttattgtttttggaataaccaaaaccaaccataaaaaattttaac |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||| ||||||| |
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| T |
20015581 |
agaaactaaattagcagacttaacatagccactaatcaaattagaataaaaacatttattgtttttggagtagccaaaaccaaccatcaaaacttttaac |
20015680 |
T |
|
| Q |
114 |
tcatctatcttatcttgtaaccctttaagtgcatataaataagcaagaaaaccaaaactaaaaacatcaggcttaacaccgagcttggacataatttcaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
20015681 |
tcatctatcttatcttgtaaccctttaagtgcatataaataagcaagaaatccaaaactaaacacatcaggcttaacaccgagcttggacataatttcaa |
20015780 |
T |
|
| Q |
214 |
caactctgttagcatcagttaccgattgaaggaaaaaacagcaggcttcaagagcagcattacaag |
279 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
20015781 |
caactctgttagcatcagttaccgattgaaggcaaaaacagcaggcttcaagagcagcattacaag |
20015846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 14 - 279
Target Start/End: Complemental strand, 19701034 - 19700769
Alignment:
| Q |
14 |
agaaactaaattagcagacttaacatagccactaatcaaattagaataaaaacatttattgtttttggaataaccaaaaccaaccataaaaaattttaac |
113 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||| ||||||| |
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| T |
19701034 |
agaaactaaattagcagacttaacatagccactaatcaaattagaataaaaacatttattgtttttggagtagccaaaaccaaccatcaaaacttttaac |
19700935 |
T |
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| Q |
114 |
tcatctatcttatcttgtaaccctttaagtgcatataaataagcaagaaaaccaaaactaaaaacatcaggcttaacaccgagcttggacataatttcaa |
213 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
19700934 |
tcgtctatcttatcttgtaaccctttaagtgcatataaataagcaagaaatccaaaactaaacacatcaggcttaacaccgagcttggacataatttcaa |
19700835 |
T |
|
| Q |
214 |
caactctgttagcatcagttaccgattgaaggaaaaaacagcaggcttcaagagcagcattacaag |
279 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
19700834 |
caactctgttagcatcagttaccgattgaaggcaaaaacagcaggcttcaagagcagcattacaag |
19700769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 113 - 231
Target Start/End: Complemental strand, 24465048 - 24464926
Alignment:
| Q |
113 |
ctcatctatcttatcttgtaaccctttaagtgc----atataaataagcaagaaaaccaaaactaaaaacatcaggcttaacaccgagcttggacataat |
208 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||| ||||||||||| ||||| | |||||| |
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| T |
24465048 |
ctcatctatcttatcttgtaaccctttaagtgcgtgcatataaataagcaagaaatccaaaactaaactcatctggcttaacaccaagctttgtcataat |
24464949 |
T |
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| Q |
209 |
ttcaacaactctgttagcatcag |
231 |
Q |
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| ||| |||||||| |||||||| |
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| T |
24464948 |
tccaataactctgtcagcatcag |
24464926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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