View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2046_high_15 (Length: 256)
Name: NF2046_high_15
Description: NF2046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2046_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 19988987 - 19988742
Alignment:
| Q |
1 |
tgtcttcccaacaagacaaccacatacgcagacaaattccaccaatttcttcaatttgaacacattcattcatgggttgtccggtctcaaaaaaccttac |
100 |
Q |
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| T |
19988987 |
tgtcttcctaacaagacaaccacatacacacacaaattccaccaatttcttcaatttgaacacattcattcatgggttgtccagtctcaaaaaaccttac |
19988888 |
T |
|
| Q |
101 |
catagttgtcaaaaattccgaggaccaccattctaattcttcacaagtttcaaaagctatgtctctcccaatgcctcttgtgcatcatcctccaacaaga |
200 |
Q |
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| T |
19988887 |
catagttgttaaaaattccgaggacaaccattctaattcttcacaagtttcaaaagctatgtctctcccaatgcctcttgtgcatcaccctccaacaaga |
19988788 |
T |
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| Q |
201 |
aaaggtgatactcatcaccttgtttccctcacctccaccacctatg |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19988787 |
aaaggtgatactcatcaccttgtttccctcacctccaccacctatg |
19988742 |
T |
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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 152 - 246
Target Start/End: Complemental strand, 35420901 - 35420807
Alignment:
| Q |
152 |
aaaagctatgtctctcccaatgcctcttgtgcatcatcctccaacaagaaaaggtgatactcatcaccttgtttccctcacctccaccacctatg |
246 |
Q |
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||||||| |||| || ||||||||||| | ||||| |||||||| | ||||||||| ||||||||||||||||| ||||| ||||| ||||||| |
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| T |
35420901 |
aaaagctttgtcccttacaatgcctcttatccatcaccctccaaccaaaaaaggtgacactcatcaccttgtttcactcacttccactacctatg |
35420807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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