View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2046_high_16 (Length: 253)

Name: NF2046_high_16
Description: NF2046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2046_high_16
NF2046_high_16
[»] chr1 (9 HSPs)
chr1 (1-237)||(39422302-39422538)
chr1 (124-237)||(9599654-9599768)
chr1 (105-235)||(40419528-40419659)
chr1 (138-205)||(16822312-16822379)
chr1 (128-206)||(4379917-4379995)
chr1 (180-237)||(43423683-43423741)
chr1 (107-216)||(52442785-52442895)
chr1 (186-237)||(35828810-35828862)
chr1 (158-206)||(40920829-40920877)
[»] chr6 (3 HSPs)
chr6 (124-237)||(33083966-33084080)
chr6 (127-206)||(12134193-12134272)
chr6 (127-217)||(33998284-33998375)
[»] chr5 (11 HSPs)
chr5 (64-199)||(6368224-6368359)
chr5 (147-237)||(32516489-32516578)
chr5 (64-197)||(16134480-16134613)
chr5 (158-206)||(683984-684032)
chr5 (178-238)||(7359518-7359579)
chr5 (149-206)||(14667690-14667747)
chr5 (176-237)||(14749267-14749329)
chr5 (180-237)||(418247-418303)
chr5 (141-206)||(21093701-21093766)
chr5 (158-237)||(30588395-30588471)
chr5 (141-237)||(11002683-11002778)
[»] chr4 (12 HSPs)
chr4 (127-237)||(44359995-44360109)
chr4 (124-237)||(17900388-17900502)
chr4 (77-237)||(50662250-50662409)
chr4 (102-206)||(27991707-27991811)
chr4 (163-237)||(44047608-44047683)
chr4 (144-206)||(45185309-45185371)
chr4 (183-237)||(10775682-10775737)
chr4 (150-237)||(51252721-51252807)
chr4 (180-237)||(33709888-33709946)
chr4 (158-237)||(10208980-10209056)
chr4 (178-238)||(20998974-20999035)
chr4 (147-199)||(8917626-8917678)
[»] chr8 (12 HSPs)
chr8 (138-215)||(16252857-16252933)
chr8 (127-237)||(33511271-33511378)
chr8 (141-237)||(41972038-41972131)
chr8 (151-237)||(16705697-16705782)
chr8 (148-237)||(32043522-32043612)
chr8 (78-174)||(39953588-39953684)
chr8 (127-237)||(30113457-30113568)
chr8 (141-199)||(2518690-2518748)
chr8 (132-206)||(39760716-39760790)
chr8 (141-237)||(13171909-13172006)
chr8 (180-237)||(25985485-25985541)
chr8 (158-236)||(18474221-18474296)
[»] chr7 (9 HSPs)
chr7 (127-237)||(30200223-30200330)
chr7 (127-237)||(36514467-36514576)
chr7 (160-237)||(47796396-47796476)
chr7 (138-237)||(48736159-48736259)
chr7 (180-237)||(19262693-19262749)
chr7 (141-237)||(36136689-36136786)
chr7 (128-216)||(39811869-39811958)
chr7 (180-216)||(40830190-40830225)
chr7 (186-237)||(42177275-42177327)
[»] chr2 (5 HSPs)
chr2 (142-237)||(9556628-9556724)
chr2 (147-246)||(9578955-9579052)
chr2 (124-237)||(36039131-36039245)
chr2 (64-197)||(7292836-7292969)
chr2 (127-195)||(45077659-45077727)
[»] chr3 (5 HSPs)
chr3 (90-237)||(344971-345119)
chr3 (141-242)||(22902731-22902831)
chr3 (191-238)||(37487201-37487247)
chr3 (180-237)||(3987011-3987069)
chr3 (186-238)||(54365235-54365286)


Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 39422538 - 39422302
Alignment:
Q  1 tactgatactaccgatttatattagaatataaagatcagaattgtatacattatattagaagataagaccgatgatgttgtatgagataaagtgttgaaa 100  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  39422538 tactgatgctaccaatttatattagaatataaagatcagaattgtatacattatattagaagataagaccgatgatgttgtatgagataaagtgttgaac 39422439  T
Q  101 ggtgaagaaacaacacaaactttaagtaagcgtagctgaaatgagaatgttgtgttagatgtgtggtaggattatatgagatagaattagaaatgacaat 200  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39422438 ggtgaagaaacaacacgaactttaagtaagcgtagctgaaatgagaatgttgtgttagatgtgtggtaggattatatgagatagaattagaaatgacaat 39422339  T
Q  201 attagaagagagttggagtaacacatatagtagaaaa 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  39422338 attagaagagagttggagtaacacatatagtagaaaa 39422302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 124 - 237
Target Start/End: Complemental strand, 9599768 - 9599654
Alignment:
Q  124 aagtaagcgtagctgaaatgagaatgttgtgttagatgtgtggtaggattatatgagatagaattagaaatgacaatattaga-agagagttggagtaac 222  Q
    ||||||||||||| || ||||| |||||||||| |||| |||||| || || | | ||||  ||||| |||||||  |||||| ||||||||||||||||    
T  9599768 aagtaagcgtagcagagatgaggatgttgtgttggatgagtggtaagactagacgggatatgattaggaatgacatcattagagagagagttggagtaac 9599669  T
Q  223 acatatagtagaaaa 237  Q
    || ||||||||||||    
T  9599668 acctatagtagaaaa 9599654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 235
Target Start/End: Original strand, 40419528 - 40419659
Alignment:
Q  105 aagaaacaacacaaactttaagtaagcgtagctgaaatgagaatgttgtgttagatgtgtggtaggattatatgagatagaattagaaatgacaatatta 204  Q
    ||||| |||||| ||| | ||||||| ||||| || ||||| ||| || |||  |||| |||||  | || |||||||||||||||||||||||| ||||    
T  40419528 aagaaccaacacgaacataaagtaagtgtagcagagatgaggatggtgcgttgaatgtatggtaaaactagatgagatagaattagaaatgacaacatta 40419627  T
Q  205 ga-agagagttggagtaacacatatagtagaa 235  Q
    || |||||||||| |||  || ||||||||||    
T  40419628 gagagagagttggggtagaacttatagtagaa 40419659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 205
Target Start/End: Complemental strand, 16822379 - 16822312
Alignment:
Q  138 gaaatgagaatgttgtgttagatgtgtggtaggattatatgagatagaattagaaatgacaatattag 205  Q
    |||||||| |||||||||| |||||||||||  | || || |||||| ||||||||||||| ||||||    
T  16822379 gaaatgaggatgttgtgttggatgtgtggtaatactagataagataggattagaaatgacagtattag 16822312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 206
Target Start/End: Original strand, 4379917 - 4379995
Alignment:
Q  128 aagcgtagctgaaatgagaatgttgtgttagatgtgtggtaggattatatgagatagaattagaaatgacaatattaga 206  Q
    |||| ||||||| ||||| |||||||||| ||||||||||| || || |  |||||  |||||||||||||| ||||||    
T  4379917 aagcttagctgagatgaggatgttgtgttggatgtgtggtaagactagaaaagatatgattagaaatgacaacattaga 4379995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 237
Target Start/End: Original strand, 43423683 - 43423741
Alignment:
Q  180 gatagaattagaaatgacaatattaga-agagagttggagtaacacatatagtagaaaa 237  Q
    ||||| |||||||||||| | |||||| |||||||||| ||||||| ||||||||||||    
T  43423683 gataggattagaaatgaccacattagagagagagttggggtaacacctatagtagaaaa 43423741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 216
Target Start/End: Complemental strand, 52442895 - 52442785
Alignment:
Q  107 gaaacaacacaaactttaagtaagcgtagctgaaatgagaatgttgtgttagatgtgtggtaggattatatgagatagaattagaaatgacaatattaga 206  Q
    |||||||||||||  | || |||||||||| || ||||| |||||||||| ||||||||||| || || |  |||||  ||||||||||| || ||| ||    
T  52442895 gaaacaacacaaaaataaattaagcgtagcagacatgaggatgttgtgttggatgtgtggtaagactagacaagataagattagaaatgagaacattgga 52442796  T
Q  207 -agagagttgg 216  Q
     ||||||||||    
T  52442795 gagagagttgg 52442785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 237
Target Start/End: Complemental strand, 35828862 - 35828810
Alignment:
Q  186 attagaaatgacaatattaga-agagagttggagtaacacatatagtagaaaa 237  Q
    ||||||||||||||||||||| |||||||| ||||| ||| ||| ||||||||    
T  35828862 attagaaatgacaatattagagagagagtttgagtagcacctatggtagaaaa 35828810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 40920877 - 40920829
Alignment:
Q  158 gatgtgtggtaggattatatgagatagaattagaaatgacaatattaga 206  Q
    ||||||||||| ||||| | ||||||| ||||||||| |||||||||||    
T  40920877 gatgtgtggtaagattagacgagataggattagaaattacaatattaga 40920829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 124 - 237
Target Start/End: Original strand, 33083966 - 33084080
Alignment:
Q  124 aagtaagcgtagctgaaatgagaatgttgtgttagatgtgtggtaggattatatgagatagaattagaaatgacaatattaga-agagagttggagtaac 222  Q
    ||||||||||||| |||||||| ||| || ||| ||||||||||| || || ||| |||||||||||||||||| |||||||| |||||||||| ||| |    
T  33083966 aagtaagcgtagcagaaatgaggatgctgcgttggatgtgtggtaagactagatgggatagaattagaaatgacgatattagagagagagttggggtagc 33084065  T
Q  223 acatatagtagaaaa 237  Q
    || ||| ||||||||    
T  33084066 acctatggtagaaaa 33084080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 127 - 206
Target Start/End: Complemental strand, 12134272 - 12134193
Alignment:
Q  127 taagcgtagctgaaatgagaatgttgtgttagatgtgtggtaggattatatgagatagaattagaaatgacaatattaga 206  Q
    ||||| |||| || |||||||||||||||| ||||||||| | ||  | |||| ||||||||||||||||||||||||||    
T  12134272 taagcatagcagagatgagaatgttgtgttggatgtgtggcaagacaagatgatatagaattagaaatgacaatattaga 12134193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 217
Target Start/End: Complemental strand, 33998375 - 33998284
Alignment:
Q  127 taagcgtagctgaaatgagaatgttgtgttagatgtgtggtaggattatatgagatagaattagaaatgacaatattaga-agagagttgga 217  Q
    |||||||||| || ||||  |||||| ||| ||||||||||| || || ||| ||||| |||||||||||| | |||||| |||||||||||    
T  33998375 taagcgtagcagagatgaagatgttgcgttggatgtgtggtaagactagatgtgataggattagaaatgactacattagagagagagttgga 33998284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 64 - 199
Target Start/End: Complemental strand, 6368359 - 6368224
Alignment:
Q  64 taagaccgatgatgttgtatgagataaagtgttgaaaggtgaagaaacaacacaaactttaagtaagcgtagctgaaatgagaatgttgtgttagatgtg 163  Q
    |||||| ||||||||||||||||| || |||||||| ||| || || |||| ||||| |  | ||||| || ||  |||||| |||||| ||||||||||    
T  6368359 taagactgatgatgttgtatgagacaacgtgttgaacggtaaacaaccaacgcaaacatagaataagcataacttgaatgaggatgttgcgttagatgtg 6368260  T
Q  164 tggtaggattatatgagatagaattagaaatgacaa 199  Q
    ||||| || || | ||||||||||||||||||||||    
T  6368259 tggtaagaatagacgagatagaattagaaatgacaa 6368224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 147 - 237
Target Start/End: Original strand, 32516489 - 32516578
Alignment:
Q  147 atgttgtgttagatgtgtggtaggattatatgagatagaattagaaatgacaatattagaagagagttggagtaacacatatagtagaaaa 237  Q
    |||||||||| ||||||||||| || || |   |||||| ||||||||||||| |||||| ||||||||||||||||| ||||||||||||    
T  32516489 atgttgtgttggatgtgtggtaagactagacaggatagacttagaaatgacaacattaga-gagagttggagtaacacttatagtagaaaa 32516578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 64 - 197
Target Start/End: Complemental strand, 16134613 - 16134480
Alignment:
Q  64 taagaccgatgatgttgtatgagataaagtgttgaaaggtgaagaaacaacacaaactttaagtaagcgtagctgaaatgagaatgttgtgttagatgtg 163  Q
    ||||||||| |||||||||||||| | ||| ||  |  |||||||| |||||||||| |  ||||||  ||||  ||||||| |||||||||| |||||     
T  16134613 taagaccgacgatgttgtatgagacagagtattacacagtgaagaaccaacacaaacatatagtaagtatagcataaatgaggatgttgtgttggatgta 16134514  T
Q  164 tggtaggattatatgagatagaattagaaatgac 197  Q
    ||||| || || |||||||| |||||||||||||    
T  16134513 tggtaagactagatgagataaaattagaaatgac 16134480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 684032 - 683984
Alignment:
Q  158 gatgtgtggtaggattatatgagatagaattagaaatgacaatattaga 206  Q
    ||||||||||| || || |||||||||||||||||||||||||||||||    
T  684032 gatgtgtggtaagactagatgagatagaattagaaatgacaatattaga 683984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 238
Target Start/End: Complemental strand, 7359579 - 7359518
Alignment:
Q  178 gagatagaattagaaatgacaatattaga-agagagttggagtaacacatatagtagaaaat 238  Q
    ||||||||||||||||||||||| ||||| ||||||||   ||||||| |||||||||||||    
T  7359579 gagatagaattagaaatgacaatgttagagagagagttcaggtaacacctatagtagaaaat 7359518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 206
Target Start/End: Original strand, 14667690 - 14667747
Alignment:
Q  149 gttgtgttagatgtgtggtaggattatatgagatagaattagaaatgacaatattaga 206  Q
    |||||||| |||||||| || || || ||||| |||||||||||||||||||||||||    
T  14667690 gttgtgttggatgtgtgataagactagatgaggtagaattagaaatgacaatattaga 14667747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 237
Target Start/End: Original strand, 14749267 - 14749329
Alignment:
Q  176 atgagatagaattagaaatgacaatattaga-agagagttggagtaacacatatagtagaaaa 237  Q
    ||||||||| ||||||||||| || |||||| |||||||||| ||| ||| ||||||||||||    
T  14749267 atgagataggattagaaatgaaaacattagagagagagttggtgtagcacctatagtagaaaa 14749329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 237
Target Start/End: Complemental strand, 418303 - 418247
Alignment:
Q  180 gatagaattagaaatgacaatattagaagagagttggagtaacacatatagtagaaaa 237  Q
    |||||||||||||||||||| ||||| |||||||||| ||| ||| ||| ||||||||    
T  418303 gatagaattagaaatgacaacattag-agagagttggggtagcacctatggtagaaaa 418247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 206
Target Start/End: Original strand, 21093701 - 21093766
Alignment:
Q  141 atgagaatgttgtgttagatgtgtggtaggattatatgagatagaattagaaatgacaatattaga 206  Q
    ||||| |||||| |||  |||||||||| || || ||| ||| |||||||||||||||||||||||    
T  21093701 atgaggatgttgcgttgtatgtgtggtaagactagatgtgatggaattagaaatgacaatattaga 21093766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 237
Target Start/End: Original strand, 30588395 - 30588471
Alignment:
Q  158 gatgtgtggtaggattatatgagatagaattagaaatgacaatattagaagagagttggagtaacacatatagtagaaaa 237  Q
    ||||||||||| ||| | ||||||||  ||||||||||||||||||   |||||||| ||||||||  |||| |||||||    
T  30588395 gatgtgtggtaagatcaaatgagatatgattagaaatgacaatatt---agagagttagagtaacatgtataatagaaaa 30588471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 237
Target Start/End: Complemental strand, 11002778 - 11002683
Alignment:
Q  141 atgagaatgttgtgttagatgtgtggtaggattatatgagatagaattagaaatgacaatattagaagagagttggagtaacacatatagtagaaaa 237  Q
    ||||| |||||| | | ||||||||||| ||  | ||| |||||||||||||||||||| ||||| |||||||| | ||| ||| || |||||||||    
T  11002778 atgaggatgttgcgctggatgtgtggtaagacgagatgggatagaattagaaatgacaacattag-agagagttcgggtagcacctacagtagaaaa 11002683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 127 - 237
Target Start/End: Original strand, 44359995 - 44360109
Alignment:
Q  127 taagcgtagctgaaatgagaatgttgtgttagatgtgtggtaggattatatgagatagaattagaaatgacaatattaga-----agagagttggagtaa 221  Q
    ||||||||||||| |||| | ||||||||| |||||||||||||| ||   |||||||||||||||||||||||||||||     |||||||||| |||     
T  44359995 taagcgtagctgagatgata-tgttgtgttggatgtgtggtaggactaggcgagatagaattagaaatgacaatattagatggagagagagttggggtat 44360093  T
Q  222 cacatatagtagaaaa 237  Q
    ||| ||||||||||||    
T  44360094 cacctatagtagaaaa 44360109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 124 - 237
Target Start/End: Original strand, 17900388 - 17900502
Alignment:
Q  124 aagtaagcgtagctgaaatgagaatgttgtgttagatgtgtggtaggattatatgagatagaattagaaatgacaatattaga-agagagttggagtaac 222  Q
    ||||||||||||| |||||||| |||||| ||| ||||||||||| || || ||| |||| ||||||||||||| | |||||| |  ||||||| ||| |    
T  17900388 aagtaagcgtagcagaaatgaggatgttgcgttggatgtgtggtaagactagatgggataaaattagaaatgacgacattagagacggagttggggtagc 17900487  T
Q  223 acatatagtagaaaa 237  Q
    || ||||||||||||    
T  17900488 acctatagtagaaaa 17900502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 77 - 237
Target Start/End: Original strand, 50662250 - 50662409
Alignment:
Q  77 gttgtatgagataaagtgttgaaaggtgaagaaacaacaca-aactttaagtaagcgtagctgaaatgagaatgttgtgttagatgtgtggtaggattat 175  Q
    ||||||||  ||| ||||||||  ||||||||| ||||||| || | ||| |||||||||| || | ||| |||||||||  ||||||||||| || |||    
T  50662250 gttgtatggaatagagtgttgagtggtgaagaaccaacacataaatataa-taagcgtagcggagacgaggatgttgtgtaggatgtgtggtaagactat 50662348  T
Q  176 atgagatagaattagaaatgacaatattagaagagagttggagtaacacatatagtagaaaa 237  Q
    ||||||||| ||| |||||||||  ||||| |||||||| | | ||||| ||||||||||||    
T  50662349 atgagataggattggaaatgacagcattag-agagagtttgggcaacacctatagtagaaaa 50662409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 102 - 206
Target Start/End: Complemental strand, 27991811 - 27991707
Alignment:
Q  102 gtgaagaaacaacacaaactttaagtaagcgtagctgaaatgagaatgttgtgttagatgtgtggtaggattatatgagatagaattagaaatgacaata 201  Q
    ||||| || |||||| ||| | || |||| ||||| |||||||  |||||||||| ||||||||||| ||||| |||||||||||||| |||| || |||    
T  27991811 gtgaataaccaacacgaacataaaataagtgtagcagaaatgaagatgttgtgttggatgtgtggtaagattagatgagatagaattaaaaataacgata 27991712  T
Q  202 ttaga 206  Q
    |||||    
T  27991711 ttaga 27991707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 237
Target Start/End: Complemental strand, 44047683 - 44047608
Alignment:
Q  163 gtggtaggattatatgagatagaattagaaatgacaatattaga-agagagttggagtaacacatatagtagaaaa 237  Q
    ||||||||||||   | |||||||||||||||||||| |||||| |||||||||| ||| ||| ||||||||||||    
T  44047683 gtggtaggattaggcgggatagaattagaaatgacaacattagagagagagttggggtagcacctatagtagaaaa 44047608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 144 - 206
Target Start/End: Complemental strand, 45185371 - 45185309
Alignment:
Q  144 agaatgttgtgttagatgtgtggtaggattatatgagatagaattagaaatgacaatattaga 206  Q
    ||||| ||||||| ||||||| ||| || || |||||||||||||||||||||||| ||||||    
T  45185371 agaatattgtgttggatgtgtagtaagactagatgagatagaattagaaatgacaacattaga 45185309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 237
Target Start/End: Complemental strand, 10775737 - 10775682
Alignment:
Q  183 agaattagaaatgacaatattaga-agagagttggagtaacacatatagtagaaaa 237  Q
    ||||||||||||||||| |||||| |||| ||||| ||||||| ||||||||||||    
T  10775737 agaattagaaatgacaacattagagagagtgttggggtaacacctatagtagaaaa 10775682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 237
Target Start/End: Complemental strand, 51252807 - 51252721
Alignment:
Q  150 ttgtgttagatgtgtggtaggattatatgagatagaattagaaatgacaatattagaagagagttggagtaacacatatagtagaaaa 237  Q
    ||||||||||||||| ||| || || | ||||||| |||||||||||| | ||||| |||||||||| ||| ||| | ||||||||||    
T  51252807 ttgtgttagatgtgtcgtaagactagacgagataggattagaaatgactacattag-agagagttggggtagcacctctagtagaaaa 51252721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 237
Target Start/End: Original strand, 33709888 - 33709946
Alignment:
Q  180 gatagaattagaaatgacaatattaga-agagagttggagtaacacatatagtagaaaa 237  Q
    ||||| |||||||||| ||| |||||| |||||||||| ||||||| ||||||||||||    
T  33709888 gataggattagaaatggcaacattagagagagagttggggtaacacctatagtagaaaa 33709946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 237
Target Start/End: Original strand, 10208980 - 10209056
Alignment:
Q  158 gatgtgtggtaggattatatgagatagaattagaaatgacaatattagaagagagttggagtaacacatatagtagaaaa 237  Q
    ||||||||||| || || ||| |||||||||||||||||||| |||   |||||||||| |||  || ||||||||||||    
T  10208980 gatgtgtggtaagactagatgggatagaattagaaatgacaacatt---agagagttggggtagaacctatagtagaaaa 10209056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 238
Target Start/End: Original strand, 20998974 - 20999035
Alignment:
Q  178 gagatagaattagaaatgacaatattaga-agagagttggagtaacacatatagtagaaaat 238  Q
    ||||||| ||||||||||| ||||||||| || ||||||| ||||||| |||| ||||||||    
T  20998974 gagataggattagaaatgataatattagatagggagttggggtaacacctatactagaaaat 20999035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 199
Target Start/End: Complemental strand, 8917678 - 8917626
Alignment:
Q  147 atgttgtgttagatgtgtggtaggattatatgagatagaattagaaatgacaa 199  Q
    ||||| |||| ||||||||||| ||| ||||||||||  ||||||||||||||    
T  8917678 atgttatgttcgatgtgtggtaagatcatatgagataagattagaaatgacaa 8917626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 215
Target Start/End: Original strand, 16252857 - 16252933
Alignment:
Q  138 gaaatgagaatgttgtgttagatgtgtggtaggattatatgagatagaattagaaatgacaatattagaagagagttg 215  Q
    |||||||| |||||||||| ||||||||||| ||||| |||||||| ||||||||||||||| ||||| |||||||||    
T  16252857 gaaatgaggatgttgtgttggatgtgtggtaagattagatgagataaaattagaaatgacaacattag-agagagttg 16252933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 237
Target Start/End: Original strand, 33511271 - 33511378
Alignment:
Q  127 taagcgtagctgaaatgagaatgttgtgttagatgtgtggtaggattatatgagatagaattagaaatgacaatattagaagagagttggagtaacacat 226  Q
    ||||| |||| |||||||| |||||| | | ||||||||||| || |||||||||||  ||||||||||| ||||||   |||||||||| ||||||| |    
T  33511271 taagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagatatgattagaaatgaaaatatt---agagagttggggtaacacct 33511367  T
Q  227 atagtagaaaa 237  Q
    || ||||||||    
T  33511368 atggtagaaaa 33511378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 141 - 237
Target Start/End: Complemental strand, 41972131 - 41972038
Alignment:
Q  141 atgagaatgttgtgttagatgtgtggtaggattatatgagatagaattagaaatgacaatattagaagagagttggagtaacacatatagtagaaaa 237  Q
    ||||| ||||||| || |||||||| || ||||| ||||||||||||||||||||| |||||||| |||||||| | ||||||| || |||||||||    
T  41972131 atgaggatgttgtattggatgtgtgataagatta-atgagatagaattagaaatgagaatattag-agagagttagggtaacaccta-agtagaaaa 41972038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 151 - 237
Target Start/End: Original strand, 16705697 - 16705782
Alignment:
Q  151 tgtgttagatgtgtggtaggattatatgagatagaattagaaatgacaatattagaagagagttggagtaacacatatagtagaaaa 237  Q
    |||||| | ||||||||| || || ||| |||||||||||||||||||| ||||| |||||||||||||| ||  ||||||| ||||    
T  16705697 tgtgttggttgtgtggtaagactagatgggatagaattagaaatgacaacattag-agagagttggagtagcatctatagtaaaaaa 16705782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 148 - 237
Target Start/End: Original strand, 32043522 - 32043612
Alignment:
Q  148 tgttgtgttagatgtgtggtaggattatatgagatagaattagaaatgacaatattaga-agagagttggagtaacacatatagtagaaaa 237  Q
    ||||| ||| ||||||||||| || || | | |||||||||||||||||||| |||||| |||||||||| ||| ||| ||||||| ||||    
T  32043522 tgttgcgttggatgtgtggtaagactagacgggatagaattagaaatgacaacattagagagagagttggggtatcacctatagtacaaaa 32043612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 174
Target Start/End: Complemental strand, 39953684 - 39953588
Alignment:
Q  78 ttgtatgagataaagtgttgaaaggtgaagaaacaacacaaactttaagtaagcgtagctgaaatgagaatgttgtgttagatgtgtggtaggatta 174  Q
    ||||||| || | ||||||||  ||| ||||| |||||| ||| | |||| |||||||| || |||||||||||| ||| ||||||||||| |||||    
T  39953684 ttgtatgggacagagtgttgagcggtaaagaaccaacacgaacataaagttagcgtagcagagatgagaatgttgcgttggatgtgtggtaagatta 39953588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 237
Target Start/End: Complemental strand, 30113568 - 30113457
Alignment:
Q  127 taagcgtagctgaaatgagaatgttgtgttagatgtgtggtaggattatatgagatagaattagaaatgacaatattaga-agagagttggagtaacaca 225  Q
    |||||||||  || |||||||||||||| ||||||| || || || || ||  ||||  ||||  ||||||| ||||||| ||||||| || ||||||||    
T  30113568 taagcgtagaggagatgagaatgttgtgctagatgtttgttaagaatagatatgataagattatgaatgacattattagagagagagtcggggtaacaca 30113469  T
Q  226 tatagtagaaaa 237  Q
    ||||||||||||    
T  30113468 tatagtagaaaa 30113457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 199
Target Start/End: Complemental strand, 2518748 - 2518690
Alignment:
Q  141 atgagaatgttgtgttagatgtgtggtaggattatatgagatagaattagaaatgacaa 199  Q
    ||||||||||||  || ||||||||||| || || ||||||||| ||||||||||||||    
T  2518748 atgagaatgttgcattggatgtgtggtaagactagatgagataggattagaaatgacaa 2518690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 206
Target Start/End: Complemental strand, 39760790 - 39760716
Alignment:
Q  132 gtagctgaaatgagaatgttgtgttagatgtgtggtaggattatatgagatagaattagaaatgacaatattaga 206  Q
    ||||| || ||||| |||||||||| ||||||||||||||||| |  |||||| | ||||||||| || ||||||    
T  39760790 gtagcagagatgaggatgttgtgttggatgtgtggtaggattagacaagataggagtagaaatgataacattaga 39760716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 237
Target Start/End: Complemental strand, 13172006 - 13171909
Alignment:
Q  141 atgagaatgttgtgttagatgtgtggtaggattatatgagatagaattagaaatgacaatattaga-agagagttggagtaacacatatagtagaaaa 237  Q
    ||||||||||||  || ||||||| ||| || || | | ||||| |||||||||||||| |||||| |||||||||| | | ||| ||||||||||||    
T  13172006 atgagaatgttgcattggatgtgtagtaagactagacgggataggattagaaatgacaagattagagagagagttggggaagcacctatagtagaaaa 13171909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 237
Target Start/End: Original strand, 25985485 - 25985541
Alignment:
Q  180 gatagaattagaaatgacaatattagaagagagttggagtaacacatatagtagaaaa 237  Q
    |||||||||||||| ||||| ||||| |||||||||| ||| ||| ||||||||||||    
T  25985485 gatagaattagaaacgacaacattag-agagagttggggtagcacctatagtagaaaa 25985541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 236
Target Start/End: Complemental strand, 18474296 - 18474221
Alignment:
Q  158 gatgtgtggtaggattatatgagatagaattagaaatgacaatattagaagagagttggagtaacacatatagtagaaa 236  Q
    ||||||||||| |  || ||| ||||||| ||||||||||||||||   |||||||| ||||| ||| |||||||||||    
T  18474296 gatgtgtggtaaggctagatgtgatagaaatagaaatgacaatatt---agagagttagagtagcacctatagtagaaa 18474221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 237
Target Start/End: Complemental strand, 30200330 - 30200223
Alignment:
Q  127 taagcgtagctgaaatgagaatgttgtgttagatgtgtggtaggattatatgagatagaattagaaatgacaatattagaagagagttggagtaacacat 226  Q
    |||| ||||| || ||||| |||||||||| ||||||||||| ||||| ||| ||||  |||||||||||||| |||   |||||||| | ||||||| |    
T  30200330 taagtgtagcagagatgaggatgttgtgttggatgtgtggtaagattagatgggatatgattagaaatgacaacatt---agagagttagggtaacacct 30200234  T
Q  227 atagtagaaaa 237  Q
    |||||||||||    
T  30200233 atagtagaaaa 30200223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 127 - 237
Target Start/End: Complemental strand, 36514576 - 36514467
Alignment:
Q  127 taagcgtagctgaaatgagaatgttgtgttagatgtgtggtaggattatatgagatagaattagaaatgacaatattagaagagagttggagtaacacat 226  Q
    |||| ||||| || ||||| |||||| ||| ||||||||||| || || | | |||||||||||||| ||||| ||||| |||||||||| ||| ||| |    
T  36514576 taagtgtagcagagatgaggatgttgcgttggatgtgtggtaagactaaacgggatagaattagaaaggacaacattag-agagagttggggtagcacct 36514478  T
Q  227 atagtagaaaa 237  Q
    |||||||||||    
T  36514477 atagtagaaaa 36514467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 160 - 237
Target Start/End: Complemental strand, 47796476 - 47796396
Alignment:
Q  160 tgtgtggtaggattatatgagatagaattagaaatgacaatattaga---agagagttggagtaacacatatagtagaaaa 237  Q
    ||||||||| || || ||| ||||| |||||||||||||||||||||   |||||||||||||| ||  ||||||||||||    
T  47796476 tgtgtggtaagactagatgggataggattagaaatgacaatattagatagagagagttggagtaccaactatagtagaaaa 47796396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 237
Target Start/End: Complemental strand, 48736259 - 48736159
Alignment:
Q  138 gaaatgagaatgttgtgttagatgtgtggtaggattatatgagatagaattagaaatgacaatattaga-agagagttggagtaacacatatagtagaaa 236  Q
    |||||||| |||||| |||  |||||||||| || || |||||||| ||||||||||||| | |||| | |||||||||| ||| ||| || ||||||||    
T  48736259 gaaatgaggatgttgcgttgaatgtgtggtaagactagatgagataaaattagaaatgacgacattatagagagagttggggtagcacctacagtagaaa 48736160  T
Q  237 a 237  Q
    |    
T  48736159 a 48736159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 237
Target Start/End: Complemental strand, 19262749 - 19262693
Alignment:
Q  180 gatagaattagaaatgacaatattagaagagagttggagtaacacatatagtagaaaa 237  Q
    |||||| ||||||||||||||||||| |||||||||| ||| ||| ||| ||||||||    
T  19262749 gatagagttagaaatgacaatattag-agagagttggggtagcacctattgtagaaaa 19262693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 237
Target Start/End: Original strand, 36136689 - 36136786
Alignment:
Q  141 atgagaatgttgtgttagatgtgtggtaggattatatgagatagaattagaaatgacaatattaga-agagagttggagtaacacatatagtagaaaa 237  Q
    |||||||||||||||| |||| |||||| || || | | |||||  |||| |||||||  |||||| |||||||||| ||| ||| ||||||||||||    
T  36136689 atgagaatgttgtgttggatgggtggtaagactagaagggataggtttaggaatgacaccattagagagagagttggggtagcacctatagtagaaaa 36136786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 128 - 216
Target Start/End: Original strand, 39811869 - 39811958
Alignment:
Q  128 aagcgtagctgaaatgagaatgttgtgttagatgtgtggtaggattatatgagatagaattagaaatgacaatattaga-agagagttgg 216  Q
    ||||||||| || ||||| ||||||  || ||||||||||| || || | | ||||| |||||||||||||| |||||| ||||||||||    
T  39811869 aagcgtagcggatatgaggatgttgctttggatgtgtggtaagactagacgtgataggattagaaatgacaacattagagagagagttgg 39811958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 216
Target Start/End: Original strand, 40830190 - 40830225
Alignment:
Q  180 gatagaattagaaatgacaatattagaagagagttgg 216  Q
    |||||||||||||||||||||||||||| ||||||||    
T  40830190 gatagaattagaaatgacaatattagaa-agagttgg 40830225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 237
Target Start/End: Complemental strand, 42177327 - 42177275
Alignment:
Q  186 attagaaatgacaatattaga-agagagttggagtaacacatatagtagaaaa 237  Q
    ||||||||||||||||||||| |||||||||  ||| ||| ||||||||||||    
T  42177327 attagaaatgacaatattagagagagagttgaggtatcacctatagtagaaaa 42177275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 237
Target Start/End: Complemental strand, 9556724 - 9556628
Alignment:
Q  142 tgagaatgttgtgttagatgtgtggtaggattatatgagatagaattagaaatgacaatattaga-agagagttggagtaacacatatagtagaaaa 237  Q
    |||| |||||||||| ||||||||||| ||||| | | ||||  |||||||||||||| |||||| ||| |||||| ||||||| ||||||||||||    
T  9556724 tgaggatgttgtgttggatgtgtggtaagattagacgggatatgattagaaatgacaacattagagagaaagttggggtaacacttatagtagaaaa 9556628  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 246
Target Start/End: Complemental strand, 9579052 - 9578955
Alignment:
Q  147 atgttgtgttagatgtgtggtaggattatatgagatagaattagaaatgacaatattagaagagagttggagtaacacatatagtagaaaatgatgatgt 246  Q
    |||||| ||| ||||||||||| || || ||  |||||||||| |||||||||| |||| |||||||||| || ||||||||||||| ||| ||||||||    
T  9579052 atgttgcgttggatgtgtggtaagaatagatatgatagaattaaaaatgacaatgttag-agagagttggggtgacacatatagtagtaaa-gatgatgt 9578955  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 124 - 237
Target Start/End: Original strand, 36039131 - 36039245
Alignment:
Q  124 aagtaagcgtagctgaaatgagaatgttgtgttagatgtgtggtaggattatatgagatagaattagaaatgacaatattaga-agagagttggagtaac 222  Q
    |||||| |||||| || ||||  |||||||||| ||||||||| | | ||| ||||| || ||||| ||||||||| |||||| | |||||||  |||||    
T  36039131 aagtaatcgtagcagagatgaagatgttgtgttggatgtgtggcaagtttagatgagttaaaattataaatgacaacattagagaaagagttgacgtaac 36039230  T
Q  223 acatatagtagaaaa 237  Q
    ||||||| |||||||    
T  36039231 acatataatagaaaa 36039245  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 197
Target Start/End: Original strand, 7292836 - 7292969
Alignment:
Q  64 taagaccgatgatgttgtatgagataaagtgttgaaaggtgaagaaacaacacaaactttaagtaagcgtagctgaaatgagaatgttgtgttagatgtg 163  Q
    |||||||||  |||||||| | || || ||||||   ||||||||| |||||  ||| | || |||||||||  ||||| ||||||||||||| |||| |    
T  7292836 taagaccgacaatgttgtacgggacaaggtgttgggtggtgaagaaccaacatgaacataaaataagcgtagtagaaataagaatgttgtgttggatgag 7292935  T
Q  164 tggtaggattatatgagatagaattagaaatgac 197  Q
    | ||| || || |||||||| |||||||||||||    
T  7292936 ttgtatgactagatgagatacaattagaaatgac 7292969  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 45077659 - 45077727
Alignment:
Q  127 taagcgtagctgaaatgagaatgttgtgttagatgtgtggtaggattatatgagatagaattagaaatg 195  Q
    ||||| ||||||| ||||| |||||| ||| ||||||||||| || || |  |||||||||||||||||    
T  45077659 taagcatagctgagatgaggatgttgcgttggatgtgtggtaagactagactagatagaattagaaatg 45077727  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 90 - 237
Target Start/End: Complemental strand, 345119 - 344971
Alignment:
Q  90 aagtgttgaaaggtgaagaaacaacacaaactttaagtaagcgtagctgaaatgagaatgttgtgttagatgtgtggtaggattatatgagatagaatta 189  Q
    |||||||||  ||| ||||| ||||||||   | |||||||| |||| ||||| || ||||| |||| ||| ||||||| || || | ||||||| ||||    
T  345119 aagtgttgagcggttaagaaccaacacaagaataaagtaagcatagcggaaattaggatgttatgttggatttgtggtaagactagacgagataggatta 345020  T
Q  190 gaaatgacaatattaga-agagagttggagtaacacatatagtagaaaa 237  Q
    |||||||  | |||||| |||||||||| ||| ||| ||||||||||||    
T  345019 gaaatgatgacattagagagagagttggggtagcacttatagtagaaaa 344971  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 242
Target Start/End: Original strand, 22902731 - 22902831
Alignment:
Q  141 atgagaatgttgtgttagatgtgtggtaggattatatgagatagaattagaaatgacaatattagaagagagttggagtaacacatatagtagaaaatga 240  Q
    ||||| ||||||||||  | ||||||||  | |||||| ||||| ||||||||||| |||||||| |||||||| ||||| ||| |||||| ||||| ||    
T  22902731 atgaggatgttgtgttccaagtgtggtaacactatatgcgataggattagaaatgaaaatattag-agagagtttgagtagcacctatagtcgaaaaaga 22902829  T
Q  241 tg 242  Q
    ||    
T  22902830 tg 22902831  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 238
Target Start/End: Complemental strand, 37487247 - 37487201
Alignment:
Q  191 aaatgacaatattagaagagagttggagtaacacatatagtagaaaat 238  Q
    ||||||| |||||||| ||||||| |||||||||||||||||||||||    
T  37487247 aaatgacgatattaga-gagagtttgagtaacacatatagtagaaaat 37487201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 237
Target Start/End: Original strand, 3987011 - 3987069
Alignment:
Q  180 gatagaattagaaatgacaatattaga-agagagttggagtaacacatatagtagaaaa 237  Q
    |||||||||||||||||| ||||| || |||||||||| ||| ||| ||||||||||||    
T  3987011 gatagaattagaaatgacgatattggagagagagttggggtatcacctatagtagaaaa 3987069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 54365286 - 54365235
Alignment:
Q  186 attagaaatgacaatattagaagagagttggagtaacacatatagtagaaaat 238  Q
    ||||||||||| ||||||||| ||||||||| ||| ||| |||||||||||||    
T  54365286 attagaaatgaaaatattaga-gagagttggggtagcacctatagtagaaaat 54365235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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