View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2046_high_17 (Length: 252)

Name: NF2046_high_17
Description: NF2046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2046_high_17
NF2046_high_17
[»] chr7 (6 HSPs)
chr7 (14-233)||(31719164-31719383)
chr7 (14-233)||(31721763-31721988)
chr7 (14-233)||(31711057-31711282)
chr7 (20-194)||(31716237-31716411)
chr7 (23-129)||(31726049-31726155)
chr7 (14-67)||(31730169-31730222)


Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 14 - 233
Target Start/End: Original strand, 31719164 - 31719383
Alignment:
Q  14 aaggtcttagaaatctcaaatataagcctagcctcaaacgcatcaccagaataacctttagacacttgacgagcctttggaatccgtttcataccaaact 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31719164 aaggtcttagaaatctcaaatataagcctagcctcaaacgcatcaccagaataacctttagacacttgacgagcctttggaatccgtttcataccaaact 31719263  T
Q  114 tgttatcagtgttcaatgcccctcctacgttaccggctaacttcaacataaagttcatatatgtattcttgacttttgtcaacaatttcaatggtgatct 213  Q
    ||||||||||||| || ||||||||||| ||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  31719264 tgttatcagtgtttaaggcccctcctacattaccagccaacttcaacataaagttcatatacgtattcttgacttttgtcaacaatttcaatggtgatct 31719363  T
Q  214 tatcatccatctcagctttg 233  Q
    |||||||||||| |||||||    
T  31719364 tatcatccatcttagctttg 31719383  T

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Target: chr7; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 14 - 233
Target Start/End: Original strand, 31721763 - 31721988
Alignment:
Q  14 aaggtcttagaaatctcaaatataagcctagcctcaaacgcatcaccagaataacctttag------acacttgacgagcctttggaatccgtttcatac 107  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||      |||||||||||||||||||||||||||||||||    
T  31721763 aaggtcttagaaatctcaaatataagcctagcctcaaatgcatcaccagaataacctttagaattagacacttgacgagcctttggaatccgtttcatac 31721862  T
Q  108 caaacttgttatcagtgttcaatgcccctcctacgttaccggctaacttcaacataaagttcatatatgtattcttgacttttgtcaacaatttcaatgg 207  Q
    ||||||||||||||||||| || ||||||||||| ||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  31721863 caaacttgttatcagtgtttaaggcccctcctacattaccagccaacttcaacataaagttcatatacgtattcttgacttttgtcaacaatttcaatgg 31721962  T
Q  208 tgatcttatcatccatctcagctttg 233  Q
    |||||||||||||||||| |||||||    
T  31721963 tgatcttatcatccatcttagctttg 31721988  T

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Target: chr7; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 14 - 233
Target Start/End: Original strand, 31711057 - 31711282
Alignment:
Q  14 aaggtcttagaaatctcaaatataagcctagcctcaaacgcatcaccagaataacctttag------acacttgacgagcctttggaatccgtttcatac 107  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||      |||||||||||||||||||||||||||||||||    
T  31711057 aaggtcttagaaatctcaaatataagcctagcctcaaatgcatcaccagaataacctttagaattagacacttgacgagcctttggaatccgtttcatac 31711156  T
Q  108 caaacttgttatcagtgttcaatgcccctcctacgttaccggctaacttcaacataaagttcatatatgtattcttgacttttgtcaacaatttcaatgg 207  Q
    |||||||||||||||| || || ||||||||||| ||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  31711157 caaacttgttatcagtattaaaggcccctcctacattaccagccaacttcaacataaagttcatatacgtattcttgacttttgtcaacaatttcaatgg 31711256  T
Q  208 tgatcttatcatccatctcagctttg 233  Q
    |||||||||||||||||| |||||||    
T  31711257 tgatcttatcatccatcttagctttg 31711282  T

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Target: chr7; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 20 - 194
Target Start/End: Original strand, 31716237 - 31716411
Alignment:
Q  20 ttagaaatctcaaatataagcctagcctcaaacgcatcaccagaataacctttagacacttgacgagcctttggaatccgtttcataccaaacttgttat 119  Q
    |||||||||| ||| |||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||    
T  31716237 ttagaaatctaaaaaataagcctagcctcgaatgcatcaccagaataacctttagatacttgacgagcctttggaatccttttcacaccaaacttgttat 31716336  T
Q  120 cagtgttcaatgcccctcctacgttaccggctaacttcaacataaagttcatatatgtattcttgacttttgtca 194  Q
    |||||||||||||||||||||| ||||| || ||||||| ||||||||||||||| |||||||||| ||||||||    
T  31716337 cagtgttcaatgcccctcctacattaccagccaacttcagcataaagttcatataagtattcttgatttttgtca 31716411  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 129
Target Start/End: Complemental strand, 31726155 - 31726049
Alignment:
Q  23 gaaatctcaaatataagcctagcctcaaacgcatcaccagaataacctttagacacttgacgagcctttggaatccgtttcataccaaacttgttatcag 122  Q
    ||||||||| |||| ||| || |||| ||||||||||  | |||| | ||||| |||||| |||||||||||||| |||||  ||||||  |||||||||    
T  31726155 gaaatctcatatatgagcttaacctccaacgcatcactggcataatccttagaaacttgaggagcctttggaatctgtttcccaccaaagatgttatcag 31726056  T
Q  123 tgttcaa 129  Q
    |||||||    
T  31726055 tgttcaa 31726049  T

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Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 31730222 - 31730169
Alignment:
Q  14 aaggtcttagaaatctcaaatataagcctagcctcaaacgcatcaccagaataa 67  Q
    |||| ||||||||||||||||||||| ||||||||||| ||||||| |||||||    
T  31730222 aaggccttagaaatctcaaatataagtctagcctcaaaagcatcacgagaataa 31730169  T

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