View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2046_high_20 (Length: 235)
Name: NF2046_high_20
Description: NF2046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2046_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 115; Significance: 1e-58; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 27 - 219
Target Start/End: Original strand, 42469054 - 42469250
Alignment:
| Q |
27 |
atgtgaacttggttcagttgatatggataatgcatagatgttgatgttcaaactttgaacacccgtttattcattttaaaaatgaatttctagttattaa |
126 |
Q |
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| T |
42469054 |
atgtgaacttgattcagttgatagggataatgcataaatgttgatgtttaaactttgaatacccgcttattcattttaaaaatgaatttctattcattaa |
42469153 |
T |
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| Q |
127 |
actactt----nnnnnnnnnnngtaacaataacaataatttgaacaaaaacgttatctcgataagttaaacttttgagtgcaatttattgtctaatt |
219 |
Q |
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| T |
42469154 |
actacttaaaaaaaaaaagacagtaacaataacaataatttgaacaaaaacgttatctcgataagttaaacttttgagtgcaatttattgtctaatt |
42469250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 42469011 - 42469053
Alignment:
| Q |
1 |
tcatcagaattatttttgtaaaagtcatgtgaacttggttcag |
43 |
Q |
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| T |
42469011 |
tcattagaattatttttgtaaaagtcatgtgaacttggttcag |
42469053 |
T |
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