View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2046_high_6 (Length: 402)
Name: NF2046_high_6
Description: NF2046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2046_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 131 - 383
Target Start/End: Complemental strand, 27589069 - 27588817
Alignment:
| Q |
131 |
tttagtaatggaaatgaatggagtaaattaaattttgtagtgaccaattcattaagaagatgggaaacggcaaggaacccatacatttcctttcatcgag |
230 |
Q |
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| T |
27589069 |
tttagtaatggaaatgaatggagtaaattaaattttgtagtgaccaattcattaagaagatgggaaacggcaaggaacccatacatttcctttcatcgag |
27588970 |
T |
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| Q |
231 |
atctgcattcacaaatgcaatatatagctatcattcaattttcaaatatttttcctttctttttaatctgatagcatgtctaattcatccatgtccacaa |
330 |
Q |
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| T |
27588969 |
atctgcattcacaaatgcaatatatagctatcattcaattttcaaatatttttcctttctttttaatctgatagcatgtctaattcatccatgtccacaa |
27588870 |
T |
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| Q |
331 |
caaatattaatcataaattatttaatattaattacggtttaatatgtatccca |
383 |
Q |
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| T |
27588869 |
caaatattaatcataaattatttaatattaattacggtttaatatgtatccca |
27588817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 31 - 85
Target Start/End: Complemental strand, 27589122 - 27589068
Alignment:
| Q |
31 |
caagggacataaaagagaaattaactaaattgttgatttattaaatattaatttt |
85 |
Q |
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| T |
27589122 |
caagggacataaaagagaaattaactaaattgttgatttattaaatattaatttt |
27589068 |
T |
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