View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2046_high_9 (Length: 345)
Name: NF2046_high_9
Description: NF2046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2046_high_9 |
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| [»] chr4 (6 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 16 - 345
Target Start/End: Original strand, 25038168 - 25038497
Alignment:
| Q |
16 |
atcaaatgagccaataagaatcttagattgctctttggtgaactttggtaaacgatttcccacataagacaccatgcttgatggatacgctcctgttgtc |
115 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
25038168 |
atcaaatgagccaataagaatcttagattgctctctggtgaactttggtaaacgatttcccacataagacaccatgcttgatggatactctcctgttgtc |
25038267 |
T |
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| Q |
116 |
agtggatgcataaacctacaaacaagtcttgtataatataaacatgcatataaataagattttaaatttcgggcacaagtatgtcgtgatcgatgatttt |
215 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||| |
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| T |
25038268 |
agtggctgcataaacctacaaacaagtcttgtataatataaacatgcatataaataagattttagattatgggcgcaagtatgtcgtgatcgatgatttt |
25038367 |
T |
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| Q |
216 |
gcgaagaattgtgaataaatgcaacattataccatccaaacatgaaatcaagagcacgttcggcagcttgatgatctaaagtgtcatttgagaacggcaa |
315 |
Q |
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||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |
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| T |
25038368 |
gcgaacaattgggaataaatgcaacattataccatccaaacatgaaatcaagagcacgttcggaagcttgatgatctaacgtgtcatttgagaacggcaa |
25038467 |
T |
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| Q |
316 |
aaaccagtgacaatttaaggtgatgcctat |
345 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
25038468 |
aaaccagtgacaatttaaggtgatgcctat |
25038497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 25017063 - 25017189
Alignment:
| Q |
16 |
atcaaatgagccaataagaatcttagattgctctttggtgaactttggtaaacgatttcccacataagacaccatgcttgatggatacgctcctgttgtc |
115 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||| ||||||| ||| |
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| T |
25017063 |
atcaaatgagccaataagcatcttagattgctctttggtgaactttggtaaacgatttcccgcaaaagacaccatgcttaatggatactctcctgtggtc |
25017162 |
T |
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| Q |
116 |
agtggatgcataaacctacaaacaagt |
142 |
Q |
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| ||| ||||||||||| ||||||||| |
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| T |
25017163 |
aatggctgcataaacctgcaaacaagt |
25017189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 195 - 345
Target Start/End: Original strand, 25017248 - 25017396
Alignment:
| Q |
195 |
tatgtcgtgatcgatgattttgcgaagaattgtgaataaatgcaacattataccatccaaacatgaaatcaagagcacgttcggcagcttgatgatctaa |
294 |
Q |
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|||||| ||||| ||||||||| | | ||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
25017248 |
tatgtcttgatccatgattttgtggacgattgtgaataaatgcgacatta--ccatccaaacatgtaatcaagagcacgttcggcagcttgatgatctaa |
25017345 |
T |
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| Q |
295 |
agtgtcatttgagaacggcaaaaaccagtgacaatttaaggtgatgcctat |
345 |
Q |
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|||| |||||||||||||| |||||||||| | ||||| |||||||||| |
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| T |
25017346 |
tgtgtgatttgagaacggcagaaaccagtgagagcttaagctgatgcctat |
25017396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 16 - 139
Target Start/End: Original strand, 4623975 - 4624098
Alignment:
| Q |
16 |
atcaaatgagccaataagaatcttagattgctctttggtgaactttggtaaacgatttcccacataagacaccatgcttgatggatacgctcctgttgtc |
115 |
Q |
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|||| |||| ||||||||| |||||||||||||| ||||||||||||| || ||||||||||||||||| ||||| ||||||| ||||||||||| |
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| T |
4623975 |
atcatatgacccaataagactcttagattgctctgcagtgaactttggtagcttatctcccacataagacaccaagcttgctggatactctcctgttgtc |
4624074 |
T |
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| Q |
116 |
agtggatgcataaacctacaaaca |
139 |
Q |
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||||| || |||||||| |||||| |
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| T |
4624075 |
agtggctgtataaacctgcaaaca |
4624098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 139
Target Start/End: Original strand, 4599647 - 4599767
Alignment:
| Q |
16 |
atcaaatgagccaataagaatcttagattgctctttggtgaactttggtaaacgatttcccacataagacaccatgcttgatggatacgctcctgttgtc |
115 |
Q |
| |
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|||| |||| ||||||||| | ||||||||||||| ||||||||||||||| || ||| ||||||||||| ||| ||||||| |||| |||||| |
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| T |
4599647 |
atcatatgacccaataagacttttagattgctcttcagtgaactttggtaaatcttt---cacgaaagacaccatgtttgctggatactctccggttgtc |
4599743 |
T |
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| Q |
116 |
agtggatgcataaacctacaaaca |
139 |
Q |
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||||| || |||||||| |||||| |
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| T |
4599744 |
agtggctgtataaacctgcaaaca |
4599767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 294
Target Start/End: Original strand, 4599847 - 4599896
Alignment:
| Q |
245 |
taccatccaaacatgaaatcaagagcacgttcggcagcttgatgatctaa |
294 |
Q |
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||||||||||||||||||||||| || ||||||| ||||| |||||||| |
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| T |
4599847 |
taccatccaaacatgaaatcaagggcgcgttcggtggcttgttgatctaa |
4599896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 245 - 345
Target Start/End: Complemental strand, 18804477 - 18804377
Alignment:
| Q |
245 |
taccatccaaacatgaaatcaagagcacgttcggcagcttgatgatctaaagtgtcatttgagaacggcaaaaaccagtgacaatttaaggtgatgccta |
344 |
Q |
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|||||||||| || |||||||| |||||||||||||||||||||||||| | || || ||| ||||||||||||| ||| ||||| |||||||||| |
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| T |
18804477 |
taccatccaagcaataaatcaagggcacgttcggcagcttgatgatctaacgggttatctgattgcggcaaaaaccaggtacagtttaatgtgatgccta |
18804378 |
T |
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| Q |
345 |
t |
345 |
Q |
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| |
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| T |
18804377 |
t |
18804377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 21 - 139
Target Start/End: Complemental strand, 18804827 - 18804712
Alignment:
| Q |
21 |
atgagccaataagaatcttagattgctctttggtgaactttggtaaacgatttcccacataagacaccatgcttgatggatacgctcctgttgtcagtgg |
120 |
Q |
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|||| ||||||||| ||| | |||||||||| |||||||||||||| || ||| || |||||||||||||| ||| ||| |||||||||||||||| |
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| T |
18804827 |
atgacccaataagactctcatattgctctttagtgaactttggtaatg---tttccaaattagacaccatgcttgctgggtactctcctgttgtcagtgg |
18804731 |
T |
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| Q |
121 |
atgcataaacctacaaaca |
139 |
Q |
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|| | |||||| |||||| |
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| T |
18804730 |
ttgtaaaaacctgcaaaca |
18804712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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