View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2046_low_10 (Length: 354)
Name: NF2046_low_10
Description: NF2046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2046_low_10 |
 | |
|
| [»] scaffold0016 (4 HSPs) |
| | |
|
| [»] scaffold0060 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 307; Significance: 1e-173; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 19 - 345
Target Start/End: Complemental strand, 33689119 - 33688793
Alignment:
| Q |
19 |
taatctccatataatttgcatgccatgtgttgaaaaactattagctaatgaaaaagtatatctcaaaattaactataagaattaaaaagattaaaatatc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33689119 |
taatctccatataatttgcatgccatgtgttgaaaaactattagctaatgcaaaagtatatctcaaaattaactataagaattaaaaagattaaaatatc |
33689020 |
T |
|
| Q |
119 |
agcaatgtcagaagcaaaacttatggttcaaagtaatgagtttgttaagtaattgtacatgtaagttacacgttggttacgtaccttacatacatcaagt |
218 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33689019 |
agcaatgtcaaaagcaaaacttatggttcaaagtattgagtttgttaagtaattgtatatgtaagttacacgttggttacgtaccttacatacatcaagt |
33688920 |
T |
|
| Q |
219 |
atcaactactttatcatattatgaatcaatcaaaacattgagatgaagaaagagtcacttatagtgattgcattcaattatagagcactatcatctcaat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33688919 |
atcaactactttatcatattatgaatcaatcaaaacattgagatgaagaaagagtcacttatagtgattgcattcaattatagagcactatcatctcaat |
33688820 |
T |
|
| Q |
319 |
ttctcaccaactttttattagaataat |
345 |
Q |
| |
|
|||||||||||||||||||||| |||| |
|
|
| T |
33688819 |
ttctcaccaactttttattagagtaat |
33688793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 19 - 347
Target Start/End: Complemental strand, 33697609 - 33697293
Alignment:
| Q |
19 |
taatctccatataatttgcatgccatgtgttgaaaaactattagctaatgaaaaagtatatctcaaaattaactataagaattaaaaagattaaaa-tat |
117 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||| | | |||||||||| |||||| ||| |
|
|
| T |
33697609 |
taatgtccatataatttgcatgccatgtgttgaaaaatgattagctattgcaaaagtatatctcaaaattacc---atcaattaaaaaggttaaaaatat |
33697513 |
T |
|
| Q |
118 |
cagcaatgtc-agaagcaaaacttatggttcaaagtaatgagtttgttaagtaattgtacatgtaagttacacgttggttacgtaccttacatacatcaa |
216 |
Q |
| |
|
||||||| | | ||||||||||||||||||||||| |||||||||| | ||||||||| | ||||||||||||||||||| || | ||||| |
|
|
| T |
33697512 |
cagcaatagctaaaagcaaaacttatggttcaaagtgatgagtttgtaaggtaattgtataagtaagttacacgttggttatgtgc---------atcaa |
33697422 |
T |
|
| Q |
217 |
gtatcaactactttatcatattatgaatcaatcaaaacattgagatgaagaaa-gagtcacttatagtgattgcattcaattatagagcactatcat--c |
313 |
Q |
| |
|
|||||||||| ||||| || |||||||| |||||| ||||| ||| ||| | | |||||||||||||||| |||||||||||||||||| ||| | |
|
|
| T |
33697421 |
gtatcaactagtttataat-----gaatcaatgaaaacaatgagaggaaaaaaagtgccacttatagtgattgccttcaattatagagcactaccatatc |
33697327 |
T |
|
| Q |
314 |
tcaatttctcaccaactttttattagaataatct |
347 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |
|
|
| T |
33697326 |
tcaatttctcaccaactttttattagagtaatct |
33697293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 95 - 345
Target Start/End: Complemental strand, 33676647 - 33676407
Alignment:
| Q |
95 |
aagaattaaaaagattaaaa-tatcagcaatgtc-agaagcaaaacttatggttcaaagtaatgagtttgttaagtaattgtacatgtaagttacacgtt |
192 |
Q |
| |
|
||||||||||||| |||||| ||||| ||||| | | ||||||||||||| ||||||||| |||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
33676647 |
aagaattaaaaaggttaaaaatatcaacaatggctaaaagcaaaacttatagttcaaagtgatgagtttgttaagtaattgtatatgtacgttacacgtt |
33676548 |
T |
|
| Q |
193 |
ggttacgtaccttacatacatcaagtatcaactactttatcatattatgaatcaatcaaaacattgagatgaagaaagagtcacttatagtgattgcatt |
292 |
Q |
| |
|
||||||| | || ||||||||||| | || || ||||||||||||||||||||||| ||||||| | |||||||||||||||| | |
|
|
| T |
33676547 |
ggttacg---------tgcaacaagtatcaacaagtt-----taaaatgaatcaatcaaaacattgagaggaagaaaaggccacttatagtgattgccgt |
33676462 |
T |
|
| Q |
293 |
caattatagagcactatc--atctcaatttctcaccaactttttattagaataat |
345 |
Q |
| |
|
||||||||||| || | | ||||||||| ||||||||||||||||||| |||| |
|
|
| T |
33676461 |
caattatagagtacaaccatatctcaattcttcaccaactttttattagagtaat |
33676407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 144 - 345
Target Start/End: Complemental strand, 33668012 - 33667819
Alignment:
| Q |
144 |
gttcaaagtaatgagtttgttaagtaattgtacatgtaagttacacgttggttacgtaccttacatacatcaagtatcaactactttatcatattatgaa |
243 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||| | || ||||||||||||| | |||||| || |
|
|
| T |
33668012 |
gttcaaagtgatgagtttgttaagtaattgtatatgtacgttacacgttggttacgtgcaata---------agtatcaactactagtt--tattataaa |
33667924 |
T |
|
| Q |
244 |
tcaatcaaaacattgagatgaagaaa-gagtcacttatagtgattgcattcaattatagagcactatcat--ctcaatttctcaccaactttttattaga |
340 |
Q |
| |
|
|||| |||||||||||| ||||||| || ||||||||||||||| | ||||||||||||||| | ||| ||||||| |||||||||||||||||||| |
|
|
| T |
33667923 |
tcaaagaaaacattgagaggaagaaaagactcacttatagtgatttccgtcaattatagagcacaaccatatctcaattcctcaccaactttttattaga |
33667824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 66; Significance: 4e-29; HSPs: 4)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 26 - 153
Target Start/End: Original strand, 83308 - 83437
Alignment:
| Q |
26 |
catataatttgcatgccatgtgttgaaaaactattagctaatgaaaaagtatatctcaaaattaactataagaattaaaaagatt-aaaatatcagcaat |
124 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||| ||||| |||||||||||||| || ||||||||| ||| |
|
|
| T |
83308 |
catataatttgcaagccatgtgttgaaaaatgattagctaatgcaaaagtatatctcaaaaataactctaagaattaaaaaggttaaaaatatcataaat |
83407 |
T |
|
| Q |
125 |
-gtcagaagcaaaacttatggttcaaagta |
153 |
Q |
| |
|
| | |||||||||||||||||||||||| |
|
|
| T |
83408 |
agctaaaagcaaaacttatggttcaaagta |
83437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 181
Target Start/End: Original strand, 92474 - 92574
Alignment:
| Q |
81 |
tcaaaattaactataagaattaaaaagattaaaatatcagcaatgtc-agaagcaaaacttatggttcaaagtaatgagtttgttaagtaattgtacatg |
179 |
Q |
| |
|
||||||| |||| ||||||||||||| |||||||||| |||| | | ||||||||| ||||||||||| | ||||||| |||||||||||||||||| |
|
|
| T |
92474 |
tcaaaatcaactccaagaattaaaaaggttaaaatatctctaatggctaaaagcaaaacctatggttcaaa-tgatgagttcgttaagtaattgtacatg |
92572 |
T |
|
| Q |
180 |
ta |
181 |
Q |
| |
|
|| |
|
|
| T |
92573 |
ta |
92574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 305
Target Start/End: Original strand, 101717 - 101755
Alignment:
| Q |
267 |
aaagagtcacttatagtgattgcattcaattatagagca |
305 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
101717 |
aaagagtcacttatagtgattgtcttcaattatagagca |
101755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 345
Target Start/End: Original strand, 83472 - 83523
Alignment:
| Q |
296 |
ttatagagcactatcat--ctcaatttctcaccaactttttattagaataat |
345 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||| ||||| |||| |
|
|
| T |
83472 |
ttatagagcactatcatatctcaatttttcaccaactttttgttagagtaat |
83523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 143 - 198
Target Start/End: Original strand, 33041 - 33096
Alignment:
| Q |
143 |
ggttcaaagtaatgagtttgttaagtaattgtacatgtaagttacacgttggttac |
198 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
33041 |
ggttcaaagtgatgagattgttaagtaattgtatatgtaagttaaacgttggttac |
33096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University