View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2046_low_11 (Length: 350)
Name: NF2046_low_11
Description: NF2046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2046_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 18 - 337
Target Start/End: Original strand, 48209490 - 48209809
Alignment:
| Q |
18 |
gtaagttcaatcattcattttatggacacttactggaattcatgaaccaataattcagatacatatcaatattattaaagaatttaggactcaaatttaa |
117 |
Q |
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| T |
48209490 |
gtaagttcaatcattcattttatggacacttactggaattcatgaaccaataattcagatatatatcaatattattaaagaattaaggactcaaatttaa |
48209589 |
T |
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| Q |
118 |
gttaaaatcaaagttgcacattaaacttataacatgctaagtatgctattgagctgcaatgtggtacgtagagattcatatagaaaaaatgaagaatgaa |
217 |
Q |
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| T |
48209590 |
gttaaaatcaaagttgcacattaaacttataacatgctaagtatgctattgagctgcaatgttgtacgtagagattcatatagaaaaaatgaagaatgaa |
48209689 |
T |
|
| Q |
218 |
cataagaaatctgaaacttaattacgtaaccattagctagctagatcaaagctctccttccttaacacagaagcaaggtgatacatgagcagaaatgttt |
317 |
Q |
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| T |
48209690 |
cataagaaatctgaaacttaattacgtaaccattagctagctagatcaaagctcttcttccttaacacagaagcaaggtgatacatgagcagaaatgttt |
48209789 |
T |
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| Q |
318 |
caatgcttcttttcattcct |
337 |
Q |
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| T |
48209790 |
caatgcttcttttcattcct |
48209809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 158 - 270
Target Start/End: Original strand, 48205260 - 48205376
Alignment:
| Q |
158 |
gtatgctattgagctgcaatgtggtacgtagagattcatatagaaaaaatgaagaatgaacataagaaatctgaaacttaattac--gtaa---ccatta |
252 |
Q |
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| T |
48205260 |
gtatgctattgaactgcaatgttgtacaaagagattcacatag-ccaaatgaacaaaaaacataagaaatctgaaacataattacatgtaacttccatta |
48205358 |
T |
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| Q |
253 |
gctagctagatcaaagct |
270 |
Q |
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| T |
48205359 |
gctagctggatcaaagct |
48205376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 270 - 338
Target Start/End: Original strand, 32586647 - 32586715
Alignment:
| Q |
270 |
tctccttccttaacacagaagcaaggtgatacatgagcagaaatgtttcaatgcttcttttcattccta |
338 |
Q |
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||||||||||| |||| ||||||||||||||||||||| | ||||||| ||||| |||| |||| |||| |
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| T |
32586647 |
tctccttccttgacacggaagcaaggtgatacatgagctggaatgtttgaatgcctcttctcataccta |
32586715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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