View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2046_low_19 (Length: 294)
Name: NF2046_low_19
Description: NF2046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2046_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-147; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 19 - 289
Target Start/End: Complemental strand, 7131963 - 7131693
Alignment:
| Q |
19 |
taaacatctcagcatcagtccaatattgaggatcccttgccatagcccatacattaatcatgactttagtcttttttggtatatcataaccatcaatgtt |
118 |
Q |
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| T |
7131963 |
taaacatctcagcatcagtccaatattgaggatcccttgccatagcccatacattaatcatgactttagtcttttttggtatatcataaccatcaatgtt |
7131864 |
T |
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| Q |
119 |
ggttaattcagtgcattctctagggagtaataaaggagtaggtgagtgtaaccttaaggtctcttttatcactaattttaggtatggaagttcttgaata |
218 |
Q |
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| T |
7131863 |
ggttaattcagtgcattctctagggagtaataaaggagtaggtgagtgtaaccttaaggtctcttttatcactaattttaggtatggaagttcttgaata |
7131764 |
T |
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| Q |
219 |
tcattttcagatataatttcttttcctttgcatgcttctcttatttcagcttgtgctttgttcatctcact |
289 |
Q |
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| T |
7131763 |
tcattttcagatataatttcttttcctttgcatgcttctcttatttcagcttgtgccttgttcatcacact |
7131693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 21 - 277
Target Start/End: Complemental strand, 7154455 - 7154199
Alignment:
| Q |
21 |
aacatctcagcatcagtccaatattgaggatcccttgccatagcccatacattaatcatgactttagtcttttttggtatatcataaccatcaatgttgg |
120 |
Q |
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| T |
7154455 |
aacatctcagcatcagtccaatattgtggatctcttgccactgcccatgcatttatcatcactttagtattttttggtatttcataaccatctatgatgg |
7154356 |
T |
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| Q |
121 |
ttaattcagtgcattctctagggagtaataaaggagtaggtgagtgtaaccttaaggtctcttttatcactaattttaggtatggaagttcttgaatatc |
220 |
Q |
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| T |
7154355 |
tcaattcagtgcattctctagggaccaataaaggtgaaggtgggtgtaacctcattgtttctttgatcactaacttaaagtaagttagttcatttagatc |
7154256 |
T |
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| Q |
221 |
attttcagatataatttcttttcctttgcatgcttctcttatttcagcttgtgcttt |
277 |
Q |
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| T |
7154255 |
agattcagatattattttctttcctttgaatgcttctcttagttcagcttgtgcttt |
7154199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 7141688 - 7141508
Alignment:
| Q |
18 |
ataaacatctcagcatcagtccaatattgaggatcccttgccatagcccatacattaatcatgactttagtcttttttggtatatcataaccatcaatgt |
117 |
Q |
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|||||| ||||||||||| ||||||||| |||||| ||| | || ||||| |||| || | |||| |||| ||||||||||||||||| ||||| || | |
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| T |
7141688 |
ataaacctctcagcatcattccaatatttaggatctcttcctattgcccacgcatttataaagactgtagtattttttggtatatcatacccatctattt |
7141589 |
T |
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| Q |
118 |
tggttaattcagtgcattctctagggagtaataaaggagtaggtgagtgtaaccttaaggtctcttttatcactaatttta |
198 |
Q |
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|||||| ||| |||| ||| || | || ||||||| ||||| ||||||||| || || ||||| |||||||| |||| |
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| T |
7141588 |
tggttagttctgtgctcaatcttggaaccaacaaaggagaaggtgggtgtaacctcaatgtttctttgatcactaacttta |
7141508 |
T |
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