View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2046_low_2 (Length: 746)
Name: NF2046_low_2
Description: NF2046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2046_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 412; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 304 - 731
Target Start/End: Complemental strand, 31553913 - 31553486
Alignment:
| Q |
304 |
gtgattgaatatatgcataaaaatttttacactattttttgatgagtcgttccttccattcacattaacacaaggtatgaaactttgacccgtttaaaga |
403 |
Q |
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| T |
31553913 |
gtgattgaatatatgcataaaattttttacactattttttgatgagtcgttccttccaatcacattaacacaaggtatgaaactttgacccgtttaaaga |
31553814 |
T |
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| Q |
404 |
tttgaatatagttccactcgaacaaatatgatattgataaatttggtacgatgatacatatctattaaactcataaaggaaaaaataaaataaaggtgca |
503 |
Q |
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| T |
31553813 |
tttgaatatagttccactcgaacaaatatgatattgataaatttggtacgatgatacatatctattaaactcataaaggaaaaaataaaataaaggtgca |
31553714 |
T |
|
| Q |
504 |
tgcaccttgatggctctacggtaggtggtagagaaaagaggaaatgggagagtgaaaaacccttcaattacaagcatgtactctttccttaaactctcag |
603 |
Q |
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| T |
31553713 |
tgcaccttgatggctctacggtaggtggtagagaaaagaggaaatgggagagtgaaaaacccttcaattacaagcatgtactctttccttaaactctcag |
31553614 |
T |
|
| Q |
604 |
tccattcatctggatcaaaactcatcagctgtttaactgtcagctcaaatgttatctgcaacaaaacaaatatccatcatcatcgtcatcatcgcaatca |
703 |
Q |
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| T |
31553613 |
tccattcatctggatcaaaactcatcagctgtttaactgtcaactcaaatgttatctgcaacaaaacaaatatccatcatcatcgtcatcatcgcaatca |
31553514 |
T |
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| Q |
704 |
atacataaacatttcaacccatatatat |
731 |
Q |
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| T |
31553513 |
atacataaacatttcaacccacatatat |
31553486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 31554214 - 31553979
Alignment:
| Q |
1 |
cataattgtagaagtagtttcataaccagcaacgagcaaagccaacataaaatcaactatttcctcgtttgagaactgttcaccagatgccaacaatgct |
100 |
Q |
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| T |
31554214 |
cataattgtagaagtagtttcataaccagcaacgagcaaagccaacataaaatcaactatttcctcgtttgagaactgttcaccagatgccaacaatgct |
31554115 |
T |
|
| Q |
101 |
ccaagcatgtcattctttttctctatgcctatttcattctcttttctcctctgcctcactactagtgtcagtgcctctgccacctttgttcttgcctaaa |
200 |
Q |
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| T |
31554114 |
ccaagcatgtcattctttttctctatgcctatttcattctcttttctcctctgcctcactactagtgtcagtgcctctgccacctttgttcttgcctaaa |
31554015 |
T |
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| Q |
201 |
aatatcaaattacacacatatatactaatttacttgtc |
238 |
Q |
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| T |
31554014 |
aatatcaaattacacaca--tatactaatttacttgtc |
31553979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 507 - 664
Target Start/End: Complemental strand, 35476208 - 35476051
Alignment:
| Q |
507 |
accttgatggctctacggtaggtggtagagaaaagaggaaatgggagagtgaaaaacccttcaattacaagcatgtactctttccttaaactctcagtcc |
606 |
Q |
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|||||||| ||||| |||||||| |||||| || || || || || || ||||| |||||||| || || | |||||||||||||| | ||||||||| |
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| T |
35476208 |
accttgattgctctgcggtaggtactagagaggagtggtaagggaagggtaaaaaatccttcaatcacgagaacgtactctttccttagagtctcagtcc |
35476109 |
T |
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| Q |
607 |
attcatctggatcaaaactcatcagctgtttaactgtcagctcaaatgttatctgcaa |
664 |
Q |
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||||| |||||||||||||||||||||| || ||||||| |||||| ||||||||||| |
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| T |
35476108 |
attcacctggatcaaaactcatcagctgcttcactgtcaactcaaacgttatctgcaa |
35476051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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