View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2046_low_29 (Length: 205)
Name: NF2046_low_29
Description: NF2046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2046_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 17 - 193
Target Start/End: Complemental strand, 5747285 - 5747109
Alignment:
| Q |
17 |
atctgacagcggggttgctaatgaagatgaagtcaaagagtcacagaaagaaagaagatgaagtcaaaaactagaaatatcaaatataatacctgataca |
116 |
Q |
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| T |
5747285 |
atctgacagcggggttgctaatgaagatgaagtcaaagaatcatagaaagaaagaagatgaagtcaaaaactagaaatatcaaatataatacctgataca |
5747186 |
T |
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| Q |
117 |
tgggtgaacatatcaaccttactcatcaagtttctcttttggagcattagggtgttgcattgtcatttcttcttctc |
193 |
Q |
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| T |
5747185 |
agggtgaacatatcaaccttactcatcaagtttctcttttggagcattagggtgttgcattgtcatttcttcttctc |
5747109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 17 - 193
Target Start/End: Complemental strand, 5784244 - 5784068
Alignment:
| Q |
17 |
atctgacagcggggttgctaatgaagatgaagtcaaagagtcacagaaagaaagaagatgaagtcaaaaactagaaatatcaaatataatacctgataca |
116 |
Q |
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| T |
5784244 |
atctgacagcggggttgctaatgaagatgaagtcaaagaatcatagaaagaaagaagatgaagtcaaaaactagaaatatcaaatataatacctgataca |
5784145 |
T |
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| Q |
117 |
tgggtgaacatatcaaccttactcatcaagtttctcttttggagcattagggtgttgcattgtcatttcttcttctc |
193 |
Q |
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| T |
5784144 |
agggtgaacatatcaaccttactcatcaagtttctcttttggagcattagggtgttgcattgtcatttcttcttctc |
5784068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 95 - 177
Target Start/End: Original strand, 48206065 - 48206149
Alignment:
| Q |
95 |
atcaaatataatacctgatacatgggtgaacatatc-aaccttactcatcaagtttctcttttggagcatt-agggtgttgcatt |
177 |
Q |
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| T |
48206065 |
atcaaatataatatctgatacaagggtgaacatatcaaacattactcatgaagtttctcttttggagtattaagggtgttgcatt |
48206149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 98 - 193
Target Start/End: Complemental strand, 7816583 - 7816486
Alignment:
| Q |
98 |
aaatataatacctgatacatgggtgaacatatcaacc-ttactcatcaagtttctcttttggagcattaggg-tgttgcattgtcatttcttcttctc |
193 |
Q |
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||||||||| ||| ||||| |||||||| |||||| | ||||| || | ||||||||||||||||||||||| ||||||||||||||| ||||||||| |
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| T |
7816583 |
aaatataatgcctaatacaagggtgaacgtatcaaacattactaatgatgtttctcttttggagcattaggggtgttgcattgtcattacttcttctc |
7816486 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 194
Target Start/End: Complemental strand, 7820045 - 7819997
Alignment:
| Q |
147 |
tttctcttttggagcattaggg-tgttgcattgtcatttcttcttctca |
194 |
Q |
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| T |
7820045 |
tttctcttttgaagcattaggggtgttgcattgtcattatttcttctca |
7819997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 180
Target Start/End: Original strand, 2042203 - 2042274
Alignment:
| Q |
111 |
gatacatgggtgaacatatcaacc-ttactcatcaagtttctcttttggagcattagg-gtgttgcattgtc |
180 |
Q |
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| T |
2042203 |
gatacaagggtgatcatatcaaacattactcattaagtttctcttttgaagcattaggagtgttgcattgtc |
2042274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 67 - 183
Target Start/End: Original strand, 3117147 - 3117264
Alignment:
| Q |
67 |
aaagaagatgaagtcaaaaactagaaatatcaaatataatacctgatacatgggtgaacatatc-aaccttactcatcaagtttctcttttggagcatta |
165 |
Q |
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||||||||||||||| |||| ||||||||||||||| ||||| || | || | | || |||||| || |||||||| ||| ||||||||||| ||||| |
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| T |
3117147 |
aaagaagatgaagtccaaaattagaaatatcaaatacaatacttg-tgcaagcgagatcatatcaaatattactcatgaaggctctcttttggatcatta |
3117245 |
T |
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| Q |
166 |
-gggtgttgcattgtcatt |
183 |
Q |
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| T |
3117246 |
ggggtgttgcattgtcatt |
3117264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 166
Target Start/End: Complemental strand, 22977680 - 22977605
Alignment:
| Q |
91 |
aaatatcaaatataatacctgatacatgggtgaacatatc-aaccttactcatcaagtttctcttttggagcattag |
166 |
Q |
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|||||||||||||||||| |||| | ||||||||||||| ||| |||||||| |||||||||||||| || ||||| |
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| T |
22977680 |
aaatatcaaatataatacttgatttaagggtgaacatatcaaacattactcat-aagtttctcttttgcagtattag |
22977605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 118 - 193
Target Start/End: Original strand, 31150436 - 31150513
Alignment:
| Q |
118 |
gggtgaacatatcaacc-ttactcatcaagtttctcttttggagcattag-ggtgttgcattgtcatttcttcttctc |
193 |
Q |
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|||||| |||||||| | |||| ||| |||||| ||||||||| |||||| ||||| ||||||||||| ||||||||| |
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| T |
31150436 |
gggtgatcatatcaaacattacacatgaagtttatcttttggaccattagaggtgtggcattgtcattccttcttctc |
31150513 |
T |
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